Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060815.seq
         (660 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   104   9e-25
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   104   9e-25
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             23   3.4  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                22   4.5  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  104 bits (249), Expect = 9e-25
 Identities = 51/73 (69%), Positives = 60/73 (82%)
 Frame = +2

Query: 287 AGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 466
           AG V++A  + KT VAP   V KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+
Sbjct: 16  AGGVAAA--ISKTTVAPIERV-KLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSY 72

Query: 467 WRGNFANVIRYFP 505
           WRGN ANVIRYFP
Sbjct: 73  WRGNLANVIRYFP 85



 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +1

Query: 502 PDQALNFAFKDKYKQVFLGGVDKKTQF 582
           P QALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 407 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 496
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  104 bits (249), Expect = 9e-25
 Identities = 51/73 (69%), Positives = 60/73 (82%)
 Frame = +2

Query: 287 AGRVSSARRLPKTAVAPNRSVSKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 466
           AG V++A  + KT VAP   V KLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+
Sbjct: 16  AGGVAAA--ISKTTVAPIERV-KLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSY 72

Query: 467 WRGNFANVIRYFP 505
           WRGN ANVIRYFP
Sbjct: 73  WRGNLANVIRYFP 85



 Score = 56.8 bits (131), Expect = 2e-10
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +1

Query: 502 PDQALNFAFKDKYKQVFLGGVDKKTQF 582
           P QALNFAFKDKYKQVFLGGVDK TQF
Sbjct: 85  PTQALNFAFKDKYKQVFLGGVDKNTQF 111



 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +2

Query: 407 YKGIVDAFVRIPKEQGLLSFWRGNFANVIR 496
           YK  +  +  I K +G  +F++G F+N++R
Sbjct: 253 YKSTLHCWATIYKTEGGNAFFKGAFSNILR 282


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -2

Query: 311  GGRKIPAQPRKVP 273
            GGR +P +P +VP
Sbjct: 1361 GGRPVPERPERVP 1373


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 177 GSLPATPPDWGIHE 136
           GSLPA+P D G+ +
Sbjct: 239 GSLPASPADSGVSD 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,418
Number of Sequences: 438
Number of extensions: 3983
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)