Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   1.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.1  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   4.8  
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon...    25   4.8  
SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter |Schizo...    25   6.4  
SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces pombe...    25   6.4  
SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p...    25   8.4  
SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2 |Schizosacch...    25   8.4  
SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.4  
SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces pom...    25   8.4  

>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/54 (22%), Positives = 26/54 (48%)
 Frame = +3

Query: 285 FTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTD 446
           F    G P + Y    +++K++  +  +DK T  +    SS +++   ++ Y D
Sbjct: 330 FKNSEGNPVITYMTKEQEEKDSTNSFLLDKDTGAEMELVSSMLLSEWLAEHYKD 383


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -1

Query: 390 CRLLYIYLFLNFVYYSFSFSQYLRIQQL 307
           C LL+ +  L F+ +SFSFS    + Q+
Sbjct: 115 CLLLFFFFLLFFLSFSFSFSFLFFLSQI 142


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +1

Query: 196 NYKIISDNLGGMNSGNDYRKLIVQTLRNVIL 288
           N  +I  N+G  +  N+YR L+   + N+I+
Sbjct: 369 NQSVILKNIGFSSGTNEYRTLMKNAIGNLII 399


>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 97  CRVGXYELASFNKFKIHCSMHNGNIETIHIHIKNYKIISDN 219
           CR+G   LA+  K   +CS+ +G I    + I +  II  N
Sbjct: 377 CRIGKAILANSVKIGNNCSIEDGAIVAAGVVIGDNTIIEKN 417


>SPBC8E4.01c ||SPBP4G3.01|inorganic phosphate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 572

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +1

Query: 196 NYKIISDNLGGMNSGNDYRKLIVQTLRNVIL 288
           N  +I  N+G     N+YR L+   + N+I+
Sbjct: 368 NQSVILKNIGFSTGTNEYRTLMKNAIGNLII 398


>SPAC20G4.05c |||UPF0061 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
 Frame = +1

Query: 67  CLVLCYNVPT-CRVGXYELASFNKFKIHCSMHNGNIETIHIHIKNYKIISDNLGGMNSGN 243
           C V+C   P+  R+G ++L   N  +I       ++  +  +  N+ ++ D   G ++GN
Sbjct: 203 CAVVCRMAPSWIRIGTFDLQGINN-QIE------SLRKLADYCLNF-VLKDGFHGGDTGN 254

Query: 244 DYRKLI 261
            Y KL+
Sbjct: 255 RYEKLL 260


>SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 202

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 291 KEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSK 410
           KE  K         KK+K ++   +  +  +DDSHT+  K
Sbjct: 136 KESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRK 175


>SPBC947.02 |apl2||AP-1 adaptor complex subunit Apl2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 683

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/41 (24%), Positives = 19/41 (46%)
 Frame = +1

Query: 208 ISDNLGGMNSGNDYRKLIVQTLRNVILRKNTVNQLLYTQIL 330
           +   +  M  G D   L    L+N+  R  T+ +L+Y  ++
Sbjct: 38  VKRTIAAMTVGKDVSSLFPDVLKNLATRDITLKKLVYLYLI 78


>SPAPB8E5.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 103

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 375 IYLFLNFVYYSFSFSQYL 322
           IY+++ F +YSF  S YL
Sbjct: 79  IYIYIYFFFYSFLCSPYL 96


>SPAC19A8.06 |||short chain dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 397

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +1

Query: 286 LRKNTVNQLLYTQI 327
           LRK T NQL+YT++
Sbjct: 121 LRKRTKNQLIYTEV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,362
Number of Sequences: 5004
Number of extensions: 31164
Number of successful extensions: 113
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)