Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0425 - 3102629-3104692,3106505-3108546,3109918-3109989,311...    32   0.30 
04_04_0468 - 25447774-25447945,25449016-25449130,25449541-254498...    31   0.39 
08_02_1633 + 28392378-28393445                                         29   2.1  
03_01_0084 + 676538-676669,677828-677959,678085-678210,678820-67...    29   2.1  
07_03_1523 + 27432991-27433199,27433585-27434185,27434468-274346...    28   3.7  
04_04_0673 - 27168305-27168874,27168977-27169099,27169180-271694...    27   8.5  
01_06_0641 - 30782235-30782423,30782498-30782605,30782848-307829...    27   8.5  

>02_01_0425 -
           3102629-3104692,3106505-3108546,3109918-3109989,
           3110157-3111444
          Length = 1821

 Score = 31.9 bits (69), Expect = 0.30
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +3

Query: 237 WKRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKK 341
           WKRL K+NC N + +HF    G  T+    T K++
Sbjct: 124 WKRLWKLNCPN-KMKHFMWRLGHDTIALQMTLKRR 157


>04_04_0468 -
           25447774-25447945,25449016-25449130,25449541-25449877,
           25450299-25450628,25451090-25451362,25451471-25451929,
           25452307-25452516,25452617-25452828,25453304-25453404,
           25453584-25454008,25454167-25454360,25454436-25454701,
           25454809-25455015,25455121-25455281,25455741-25455933,
           25456158-25456251,25457238-25457373,25458074-25458202,
           25458315-25458449,25458549-25458613,25459875-25459950,
           25460775-25460885,25461194-25461371,25462340-25462434
          Length = 1557

 Score = 31.5 bits (68), Expect = 0.39
 Identities = 22/89 (24%), Positives = 37/89 (41%)
 Frame = +1

Query: 64  LCLVLCYNVPTCRVGXYELASFNKFKIHCSMHNGNIETIHIHIKNYKIISDNLGGMNSGN 243
           +C+ L   +P  R     +AS   FK+ C   NG     H   +N     +     NS  
Sbjct: 78  VCIFLAPTIPLVRQQAVVIASSTDFKVQCYYGNGKNSRDHQEWENDMREFEEFYNSNSVE 137

Query: 244 DYRKLIVQTLRNVILRKNTVNQLLYTQIL 330
            + ++   T  + I+ K   N+L YT+ +
Sbjct: 138 KFPRVFGMT-ASPIIGKGGSNKLNYTKCI 165


>08_02_1633 + 28392378-28393445
          Length = 355

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 351 RQNLEIDKYTIDDSHTESSKIINTTTSKXYTDN 449
           R + + D YT DD   +  ++ NTTT+  Y D+
Sbjct: 222 RHDKKFDAYTADDDWMQHLQVHNTTTTLEYDDD 254


>03_01_0084 +
           676538-676669,677828-677959,678085-678210,678820-678882,
           678964-679061,679133-679340,679859-679930,680016-680108,
           680297-680398,680568-680665,681059-681140,681274-681362,
           681960-682065,682145-682210,682527-682633,682907-683027,
           683226-683411,683490-683789,683887-683967,684061-684225,
           684297-684383,684476-684601,684750-684830,684917-684988,
           685353-685364
          Length = 934

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 229 MNSGNDYRKLIVQTLRNVILRKNTVNQLL 315
           +N  ND+ ++++ T+RN I+ +N   Q L
Sbjct: 98  LNENNDFLRMVINTVRNDIIGRNETYQCL 126


>07_03_1523 +
           27432991-27433199,27433585-27434185,27434468-27434642,
           27434686-27436418,27436871-27437317
          Length = 1054

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/44 (27%), Positives = 27/44 (61%)
 Frame = +1

Query: 199 YKIISDNLGGMNSGNDYRKLIVQTLRNVILRKNTVNQLLYTQIL 330
           ++ +++ LG  +S  + RKL+   LRN+ + ++T  ++   Q+L
Sbjct: 832 FRNLAEILGDSSSNQELRKLVAGILRNLAIDRDTRQEIGQMQML 875


>04_04_0673 -
           27168305-27168874,27168977-27169099,27169180-27169440,
           27169723-27169970,27170403-27170483,27171530-27171902
          Length = 551

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/50 (26%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 172 ETIHIHIKNYKIISDNLGGMNSGNDYRKLIVQT-LRNVILRKNTVNQLLY 318
           E +H+ +  ++ + + LGG + G  +++ + +  L  V+   N VN L Y
Sbjct: 211 EHVHVVVGEHEAVGELLGGEHPGAGHKEWLAEVQLLGVVEHPNLVNLLGY 260


>01_06_0641 -
           30782235-30782423,30782498-30782605,30782848-30782959,
           30783429-30783526,30784249-30784336,30784780-30784875,
           30785101-30785171,30786003-30786075,30787023-30787324,
           30787418-30787503,30788024-30788084,30789386-30789688
          Length = 528

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +3

Query: 345 NNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKTFHQI 467
           +  +N + D   +DD   E +K IN   +  +TD +TF  I
Sbjct: 268 SKERNKKKDVVLLDDEDMEPAKSINVEMAHKWTDLETFELI 308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,275,907
Number of Sequences: 37544
Number of extensions: 145535
Number of successful extensions: 310
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)