Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     31   0.71 
SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)                     31   0.71 
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)        28   3.8  
SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)           27   6.6  
SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)                27   8.7  
SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)                      27   8.7  

>SB_9604| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 317

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 277 FSKFVQLIFYNRFHYSFLLNYQILF 203
           FSKF++ I Y+R  Y FL+ Y +LF
Sbjct: 186 FSKFLEKIMYDRL-YKFLIKYNLLF 209


>SB_4171| Best HMM Match : Cbl_N3 (HMM E-Value=1.2)
          Length = 243

 Score = 30.7 bits (66), Expect = 0.71
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -3

Query: 277 FSKFVQLIFYNRFHYSFLLNYQILF 203
           FSKF++ I Y+R  Y FL+ Y +LF
Sbjct: 112 FSKFLEKIMYDRL-YKFLIKYNLLF 135


>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
          Length = 1292

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +1

Query: 193 KNYKIISDNLGGMNSGNDYRKLIVQTLRNVILRKNTVNQLLYTQ 324
           K+ K+ S+ L G+N  N++ +  V  LRN +  K   +Q  Y Q
Sbjct: 269 KSLKVKSEALEGLNRLNEHLEREVTNLRNQLAAKGDSSQSQYDQ 312


>SB_50808| Best HMM Match : Ricin_B_lectin (HMM E-Value=0.33)
          Length = 680

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 16/56 (28%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
 Frame = +3

Query: 276 KRHFTKEYGKPTVVYANTAK----KKKNNRQNLEIDKYTIDDSHTESSKIINTTTS 431
           +RHF+  +  P   YA++ +    + +NNRQN    +  ++    +SS  I  T+S
Sbjct: 433 ERHFSDPF--PVSQYASSTRGYRNRWRNNRQNTRPTRGAVNSKKVKSSSAITVTSS 486


>SB_5373| Best HMM Match : Lung_7-TM_R (HMM E-Value=6.6)
          Length = 303

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 324 NTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKT 455
           NT++K  NN++N    K     S+ E ++ +NT+    Y +N+T
Sbjct: 236 NTSEKVSNNKENFNSSKKV---SYNE-NQTVNTSEKVSYNENET 275


>SB_44113| Best HMM Match : CAT (HMM E-Value=0.62)
          Length = 344

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 19/65 (29%), Positives = 31/65 (47%)
 Frame = +1

Query: 115 ELASFNKFKIHCSMHNGNIETIHIHIKNYKIISDNLGGMNSGNDYRKLIVQTLRNVILRK 294
           E  +F +F+I      GN +  + +I   +IIS +L G     +Y KL  + +   I  K
Sbjct: 223 EEQNFTRFEIDNETKTGNSQHFNFYITPLEIISISLTG---AKNYAKLYSKDIFESIQLK 279

Query: 295 NTVNQ 309
           N  N+
Sbjct: 280 NFSNE 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,887,743
Number of Sequences: 59808
Number of extensions: 209246
Number of successful extensions: 527
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)