Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical p...    29   2.5  
U50310-1|AAA92538.1|  317|Caenorhabditis elegans Hypothetical pr...    29   2.5  
AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical ...    29   2.5  
AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic ac...    29   2.5  
AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a prote...    29   2.5  
AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical...    29   2.5  
Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical pr...    28   4.4  
U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical pr...    28   4.4  
Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical p...    27   5.8  
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    27   5.8  
AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic ac...    27   5.8  
AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical ...    27   5.8  

>Z81486-12|CAC42272.1|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 240 KRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSK 410
           K   K+  T F +R   ++    +++ ++ + +KKNN+     D  T   S   S +
Sbjct: 261 KEFGKLQATQFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSRNSKR 317


>U50310-1|AAA92538.1|  317|Caenorhabditis elegans Hypothetical
           protein ZC487.2 protein.
          Length = 317

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
 Frame = -2

Query: 305 FTVFFRKMTF--LKVCTINFL*SFPLFIPPKLSDIIL*FFMCICIVSIFPLCIEQ*ILNL 132
           FT F  K+ F  L VC + +L SF  +I PK+ +      + + I+ +  + +   IL +
Sbjct: 220 FTAFDIKLAFQYLLVCLVQYLASFLFYIVPKVGNGSTLAIIAMNIIGVIDMGLNPLILLI 279

Query: 131 LN 126
            N
Sbjct: 280 FN 281


>AL034391-2|CAA22301.2|  585|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1a protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 240 KRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSK 410
           K   K+  T F +R   ++    +++ ++ + +KKNN+     D  T   S   S +
Sbjct: 261 KEFGKLQATQFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSRNSKR 317


>AF139093-1|AAD48771.1|  585|Caenorhabditis elegans muscarinic
           acetylcholine receptor protein.
          Length = 585

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/57 (22%), Positives = 26/57 (45%)
 Frame = +3

Query: 240 KRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSK 410
           K   K+  T F +R   ++    +++ ++ + +KKNN+     D  T   S   S +
Sbjct: 261 KEFGKLQATQFSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSRNSKR 317


>AC199172-4|ABO33272.1|  304|Caenorhabditis elegans F-box a protein
           protein 29 protein.
          Length = 304

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 17/62 (27%), Positives = 32/62 (51%)
 Frame = +3

Query: 315 VYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKTFHQIHILKVTLYL 494
           V  N     ++NRQN  I+     ++  +  KI+   TSK Y  +KT  + +I+ + + +
Sbjct: 73  VTMNGRSYMQSNRQNKTIEGVNCMEAAFKDLKILLKHTSKLYISSKTRDRENIVSLLVDI 132

Query: 495 MK 500
           +K
Sbjct: 133 LK 134


>AC025726-18|AAK73910.1|  996|Caenorhabditis elegans Hypothetical
            protein Y71G12B.11b protein.
          Length = 996

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +3

Query: 309  TVVYANTAKKKKNNRQNLEI-DKYTIDDSHT 398
            T+  AN+AKKK+   +  E  ++  +DDSHT
Sbjct: 961  TISAANSAKKKQQEHKRTETTEQLLVDDSHT 991


>Z48006-5|CAA88049.1|  251|Caenorhabditis elegans Hypothetical
           protein F19C6.5 protein.
          Length = 251

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 20/58 (34%), Positives = 32/58 (55%)
 Frame = -1

Query: 210 YYFIVLYVYMYSFNISVVHRAMNLKLVERC*FITTYATRRYIVAQNKT*IYKIQHEYY 37
           Y+FI  +V + S  I +V++   +  V     ITTYAT   I+A   +  Y++ HEY+
Sbjct: 188 YHFIAYFVLVSSLLI-IVNKDYLIADV-----ITTYATSLLILANISSIGYQLYHEYF 239


>U40933-9|ABD63229.1|  867|Caenorhabditis elegans Hypothetical
           protein F20D12.1b protein.
          Length = 867

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 166 NIETIHIHIKNYKIISDNLGGMNSGNDYRKLIVQTLRNVILRKN 297
           +I T H+ +KN K + DN+   + G   R+    TL N++++ N
Sbjct: 535 DIPTQHVLLKNVKKMRDNIEKKSQGG--RRAYDLTLDNIVMKAN 576


>U40933-8|AAA81677.1| 1030|Caenorhabditis elegans Hypothetical
           protein F20D12.1a protein.
          Length = 1030

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 166 NIETIHIHIKNYKIISDNLGGMNSGNDYRKLIVQTLRNVILRKN 297
           +I T H+ +KN K + DN+   + G   R+    TL N++++ N
Sbjct: 698 DIPTQHVLLKNVKKMRDNIEKKSQGG--RRAYDLTLDNIVMKAN 739


>Z81486-13|CAE47465.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 219 FRRNE*WKRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHT 398
           FR ++ WK++ K     F +R   ++    +++ ++ + +KKNN+     D  T   S  
Sbjct: 285 FRNSKMWKKVKK-----FSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSR 339

Query: 399 ESSK 410
            S +
Sbjct: 340 NSKR 343


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 357 NLEIDKYTIDDSHTESSKIINTTTSKXYTD 446
           ++EI  YT+ + +  S K++N+T +K   D
Sbjct: 131 SIEIPVYTVGERNANSQKVLNSTLNKENED 160


>AY221631-1|AAP97492.1|  611|Caenorhabditis elegans muscarinic
           acetylcholine receptorlarge isoform protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 219 FRRNE*WKRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHT 398
           FR ++ WK++ K     F +R   ++    +++ ++ + +KKNN+     D  T   S  
Sbjct: 285 FRNSKMWKKVKK-----FSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSR 339

Query: 399 ESSK 410
            S +
Sbjct: 340 NSKR 343


>AL034391-3|CAE47471.1|  611|Caenorhabditis elegans Hypothetical
           protein Y40H4A.1b protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/64 (23%), Positives = 31/64 (48%)
 Frame = +3

Query: 219 FRRNE*WKRL*KINCTNFEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHT 398
           FR ++ WK++ K     F +R   ++    +++ ++ + +KKNN+     D  T   S  
Sbjct: 285 FRNSKMWKKVKK-----FSRRSMKRDVSSTSIIKSSGSMRKKNNQDGYVEDSVTPCTSSR 339

Query: 399 ESSK 410
            S +
Sbjct: 340 NSKR 343


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,273,009
Number of Sequences: 27780
Number of extensions: 171429
Number of successful extensions: 627
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)