Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   1.4  
DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex det...    23   1.8  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    23   1.8  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    23   1.8  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   1.8  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   5.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   5.5  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.2  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   7.2  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 220 LGGMNSGNDYRKLIVQTLRNVILRKNTVNQ 309
           +GG+ S N  +K   QTL  +    N VN+
Sbjct: 36  IGGVFSNNKSKKYFEQTLNELNFNLNYVNK 65


>DQ325077-1|ABD14091.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/62 (16%), Positives = 29/62 (46%)
 Frame = +3

Query: 276 KRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKT 455
           ++ +++   +    Y N  K +K   ++ E  +   +   +   KII++ ++K   +N  
Sbjct: 36  RKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 95

Query: 456 FH 461
           ++
Sbjct: 96  YN 97


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/62 (16%), Positives = 29/62 (46%)
 Frame = +3

Query: 276 KRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKT 455
           ++ +++   +    Y N  K +K   ++ E  +   +   +   KII++ ++K   +N  
Sbjct: 36  RKRYSRSREREQKSYKNERKYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 95

Query: 456 FH 461
           ++
Sbjct: 96  YN 97


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/69 (14%), Positives = 34/69 (49%)
 Frame = +3

Query: 276 KRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKT 455
           ++ +++   +    Y N  + +K  + + E  +  ++   ++  KII++ ++K   +N  
Sbjct: 258 RKRYSRSREREQKSYKNEREYRKYGKTSKERSRDRMERERSKEPKIISSLSNKTIHNNNN 317

Query: 456 FHQIHILKV 482
           ++  +  K+
Sbjct: 318 YNNYNNKKL 326



 Score = 21.0 bits (42), Expect = 7.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 118 LASFNKFKIHCSMHNGNIETIHIHIKNYKIISDNLGGMNSG 240
           L   NK K H ++   NIE      K Y   S++L     G
Sbjct: 172 LTKINKIKEHDTVLVVNIEKSENESKKYATSSNSLRNRTHG 212


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 11/50 (22%), Positives = 27/50 (54%)
 Frame = +1

Query: 121 ASFNKFKIHCSMHNGNIETIHIHIKNYKIISDNLGGMNSGNDYRKLIVQT 270
           +   K+K+ C++ N  ++ + I +++ K I+      N+ N  + L+ +T
Sbjct: 195 SDIEKYKMFCNLENVKLKELRIILEDIKHINTR---HNTKNGMKTLLSET 241


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 189 VYMYSFNISVVHR 151
           +Y+Y+ +++V+HR
Sbjct: 137 MYLYALSVAVIHR 149


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = -1

Query: 189 VYMYSFNISVVHR 151
           +Y+Y+ +++V+HR
Sbjct: 137 MYLYALSVAVIHR 149


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +3

Query: 255 INCTNFEKRHFTKEYGKPTVVY 320
           +N   ++K    K  G+PT+VY
Sbjct: 12  LNPKLYDKHRAPKFLGQPTIVY 33


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.0 bits (42), Expect = 7.2
 Identities = 9/62 (14%), Positives = 29/62 (46%)
 Frame = +3

Query: 276 KRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKT 455
           ++ +++   +    Y N  + +K   ++ E  +   +   +   KII++ ++K   +N  
Sbjct: 269 RKRYSRSREREQNSYKNEREYRKYRERSKERSRDRTERERSREPKIISSLSNKTIHNNNN 328

Query: 456 FH 461
           ++
Sbjct: 329 YN 330


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 117,597
Number of Sequences: 438
Number of extensions: 2512
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13741392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)