Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060814.seq
         (501 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51250.1 68418.m06354 kelch repeat-containing F-box family pr...    28   3.1  
At3g28910.1 68416.m03608 myb family transcription factor (MYB30)...    28   3.1  
At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04...    28   4.1  
At1g80865.1 68414.m09488 expressed protein                             28   4.1  
At1g79150.1 68414.m09229 expressed protein ; expression supporte...    28   4.1  
At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family prot...    27   5.4  
At2g27230.1 68415.m03272 transcription factor-related contains w...    27   7.1  
At5g42920.2 68418.m05233 expressed protein                             27   9.4  
At5g42920.1 68418.m05232 expressed protein                             27   9.4  

>At5g51250.1 68418.m06354 kelch repeat-containing F-box family
           protein similar to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 368

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -3

Query: 316 TTVGLPYSFVK*RFSKFVQLIFYNRFHYSFLLNYQILFY 200
           TT G+ Y++ + R+ K +  +F  R  YSF     +LFY
Sbjct: 224 TTHGVVYAYKEGRWDKAIPTMFGMRASYSFCEINNVLFY 262


>At3g28910.1 68416.m03608 myb family transcription factor (MYB30)
           identical to myb-like protein GB:AJ007289 [Arabidopsis
           thaliana] (Plant J. 20 (1), 57-66 (1999))
          Length = 323

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
 Frame = +3

Query: 318 YANTAKKKKNNR----QNLEIDKYTIDDSHTESSKIINTTTSKXYTDNKTFHQIHILKVT 485
           Y NT  KKK N+     + E+D+ ++  S + SS   N+  S+   + +    IH+ K  
Sbjct: 107 YWNTHLKKKLNKVNQDSHQELDRSSLSSSPSSSSANSNSNISRGQWERRLQTDIHLAKKA 166

Query: 486 L 488
           L
Sbjct: 167 L 167


>At4g09440.1 68417.m01554 hypothetical protein contains Pfam PF04510
           : Family of unknown function (DUF577); common family
           comprised of At4g09440, At1g66000, At1g66060
          Length = 177

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 44  SCWILYIYVLFCATMYLR 97
           SCW+L     FCAT++LR
Sbjct: 105 SCWVLAFTGAFCATIHLR 122


>At1g80865.1 68414.m09488 expressed protein
          Length = 130

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -3

Query: 262 QLIFYNRFHYSFLLNYQILFYSS 194
           Q+IFY RF +SF  +++ILF  S
Sbjct: 24  QVIFYFRFSFSFGCSFRILFLCS 46


>At1g79150.1 68414.m09229 expressed protein ; expression supported
           by MPSS
          Length = 495

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +3

Query: 270 FEKRHFTKEYGKPTVVYANTAKKKKNNRQNLEIDKYTIDDSHTESSK 410
           F    F ++ GKP     +  K KKNN++  + ++  + ++  + SK
Sbjct: 381 FMSIRFDEDIGKPNKEDEHNKKYKKNNKRKTQEEQNQVQENERKKSK 427


>At2g30220.1 68415.m03676 GDSL-motif lipase/hydrolase family protein
           similar to family II lipases EXL3 GI:15054386, EXL1
           GI:15054382, EXL2 GI:15054384 from [Arabidopsis
           thaliana]; contains Pfam profile PF00657: GDSL-like
           Lipase/Acylhydrolase
          Length = 358

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +3

Query: 39  NIHVGFCIFMSCFVLQCTYVSRRXL*ISIVQQV*DSLLYAQR 164
           NI VG    M C  +Q T   R  L I + Q+  DS+LY Q+
Sbjct: 217 NILVGGLPPMGCLPIQLTAKLRTILGICVEQENKDSILYNQK 258


>At2g27230.1 68415.m03272 transcription factor-related contains weak
           similarity to anthocyanin 1 (GI:10998404) [Petunia x
           hybrida]; identical to cDNA bHLH transcription factor
           (bHLH delta gene) gi:32563001
          Length = 650

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +3

Query: 273 EKRHFTKEYGKPTVVYANTAKKKKNNRQNLE 365
           E+ H  K  G P +V  N   K  NNR+ L+
Sbjct: 426 EQAHSLKREGSPRMVNKNETAKPANNRKRLK 456


>At5g42920.2 68418.m05233 expressed protein
          Length = 819

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 360 LEIDKYTIDDSHTESSKIINTTTSKXYTDNKTFHQIHILKVTLYL 494
           LE D    DD      K     TSK  +D    +Q+H LK+ L++
Sbjct: 304 LEDDGPDDDDDGQRRRKRPKKLTSKEGSDKAGLYQVHPLKIVLHI 348


>At5g42920.1 68418.m05232 expressed protein
          Length = 702

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 15/45 (33%), Positives = 21/45 (46%)
 Frame = +3

Query: 360 LEIDKYTIDDSHTESSKIINTTTSKXYTDNKTFHQIHILKVTLYL 494
           LE D    DD      K     TSK  +D    +Q+H LK+ L++
Sbjct: 187 LEDDGPDDDDDGQRRRKRPKKLTSKEGSDKAGLYQVHPLKIVLHI 231


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,178,302
Number of Sequences: 28952
Number of extensions: 137187
Number of successful extensions: 369
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 369
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 888318720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)