Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060813.seq
(631 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha ... 130 7e-31
At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha ... 130 7e-31
At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha ... 130 7e-31
At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha ... 130 7e-31
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 81 5e-16
At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,... 80 1e-15
At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA) ide... 58 6e-09
At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,... 56 3e-08
At2g45030.1 68415.m05606 mitochondrial elongation factor, putati... 36 0.029
At1g45332.1 68414.m05195 mitochondrial elongation factor, putati... 36 0.029
At1g06220.2 68414.m00656 elongation factor Tu family protein sim... 35 0.051
At1g06220.1 68414.m00655 elongation factor Tu family protein sim... 35 0.051
At5g39900.1 68418.m04839 GTP-binding protein LepA, putative GTP-... 33 0.16
At3g22980.1 68416.m02898 elongation factor Tu family protein sim... 33 0.16
At4g11160.1 68417.m01808 translation initiation factor IF-2, mit... 33 0.21
At1g62750.1 68414.m07082 elongation factor Tu family protein sim... 33 0.21
At4g18330.2 68417.m02719 eukaryotic translation initiation facto... 32 0.27
At4g18330.1 68417.m02718 eukaryotic translation initiation facto... 32 0.27
At2g18720.1 68415.m02180 eukaryotic translation initiation facto... 32 0.36
At1g04170.1 68414.m00407 eukaryotic translation initiation facto... 32 0.36
At5g08650.1 68418.m01029 GTP-binding protein LepA, putative 31 0.63
At1g76825.1 68414.m08940 eukaryotic translation initiation facto... 30 1.5
At1g76810.1 68414.m08938 eukaryotic translation initiation facto... 30 1.5
At1g76720.1 68414.m08929 eukaryotic translation initiation facto... 30 1.5
At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2, p... 29 1.9
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 29 1.9
At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha s... 28 4.4
At1g17220.1 68414.m02098 translation initiation factor IF-2, chl... 28 5.9
At3g02600.1 68416.m00251 phosphatidic acid phosphatase family pr... 27 7.8
>At5g60390.1 68418.m07574 elongation factor 1-alpha / EF-1-alpha
identical to SWISS-PROT:P13905 elongation factor 1-alpha
(EF-1-alpha) [Arabidopsis thaliana]
Length = 449
Score = 130 bits (314), Expect = 7e-31
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 479 NGQTREHA 502
+GQTREHA
Sbjct: 130 DGQTREHA 137
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +1
Query: 94 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 252
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K S
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 502 LAPFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIQKEVS 615
L FTLGVKQ+I NKMD+T P YS+ R++EI KEVS
Sbjct: 138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVS 175
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 246 RILKYAWVLDKLKAERE 296
R KYAWVLDKLKAERE
Sbjct: 52 RSFKYAWVLDKLKAERE 68
>At1g07940.1 68414.m00863 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 130 bits (314), Expect = 7e-31
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 479 NGQTREHA 502
+GQTREHA
Sbjct: 130 DGQTREHA 137
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +1
Query: 94 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 252
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K S
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 502 LAPFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIQKEVS 615
L FTLGVKQ+I NKMD+T P YS+ R++EI KEVS
Sbjct: 138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVS 175
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 246 RILKYAWVLDKLKAERE 296
R KYAWVLDKLKAERE
Sbjct: 52 RSFKYAWVLDKLKAERE 68
>At1g07930.1 68414.m00862 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 130 bits (314), Expect = 7e-31
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 479 NGQTREHA 502
+GQTREHA
Sbjct: 130 DGQTREHA 137
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +1
Query: 94 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 252
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K S
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 502 LAPFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIQKEVS 615
L FTLGVKQ+I NKMD+T P YS+ R++EI KEVS
Sbjct: 138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVS 175
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 246 RILKYAWVLDKLKAERE 296
R KYAWVLDKLKAERE
Sbjct: 52 RSFKYAWVLDKLKAERE 68
>At1g07920.1 68414.m00861 elongation factor 1-alpha / EF-1-alpha
identical to GB:CAA34456 from [Arabidopsis thaliana]
(Plant Mol. Biol. 14 (1), 107-110 (1990))
Length = 449
Score = 130 bits (314), Expect = 7e-31
Identities = 59/68 (86%), Positives = 64/68 (94%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITIDIALWKFET+KYY T+IDAPGHRDFIKNMITGTSQADCAVLI+ + TG FEAGISK
Sbjct: 70 GITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129
Query: 479 NGQTREHA 502
+GQTREHA
Sbjct: 130 DGQTREHA 137
Score = 97.9 bits (233), Expect = 5e-21
Identities = 46/53 (86%), Positives = 47/53 (88%)
Frame = +1
Query: 94 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 252
MGKEK HINIVVIGHVDSGKSTTTGHLIYK GGIDKR IE+FEKEA EM K S
Sbjct: 1 MGKEKFHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRS 53
Score = 50.8 bits (116), Expect = 7e-07
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1
Query: 502 LAPFTLGVKQLIVGVNKMDSTEPPYSEPRFEEIQKEVS 615
L FTLGVKQ+I NKMD+T P YS+ R++EI KEVS
Sbjct: 138 LLAFTLGVKQMICCCNKMDATTPKYSKARYDEIIKEVS 175
Score = 35.1 bits (77), Expect = 0.039
Identities = 15/17 (88%), Positives = 15/17 (88%)
Frame = +3
Query: 246 RILKYAWVLDKLKAERE 296
R KYAWVLDKLKAERE
Sbjct: 52 RSFKYAWVLDKLKAERE 68
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 81.4 bits (192), Expect = 5e-16
Identities = 34/69 (49%), Positives = 50/69 (72%), Gaps = 1/69 (1%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GIT+ +A+ F + +++V ++D+PGH+DF+ NMI G +QAD A+L++ A G FEAG
Sbjct: 302 GITMTVAVAYFNSKRHHVVLLDSPGHKDFVPNMIAGATQADAAILVIDASVGAFEAGFDN 361
Query: 479 -NGQTREHA 502
GQTREHA
Sbjct: 362 LKGQTREHA 370
Score = 57.6 bits (133), Expect = 6e-09
Identities = 23/48 (47%), Positives = 36/48 (75%)
Frame = +1
Query: 109 THINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGS 252
+ +N+ ++GHVDSGKST +G L++ G I ++ + K+EKEA+ GKGS
Sbjct: 238 SQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKQMHKYEKEAKLQGKGS 285
>At1g18070.1 68414.m02236 EF-1-alpha-related GTP-binding protein,
putative similar to EF-1-alpha-related GTP-binding
protein gi|1009232|gb|AAA79032
Length = 532
Score = 80.2 bits (189), Expect = 1e-15
Identities = 34/67 (50%), Positives = 46/67 (68%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
G T+++ FET TI+DAPGH+ ++ NMI+G SQAD VL+++A GEFE G +
Sbjct: 164 GKTVEVGRAHFETESTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYER 223
Query: 479 NGQTREH 499
GQTREH
Sbjct: 224 GGQTREH 230
Score = 60.1 bits (139), Expect = 1e-09
Identities = 25/53 (47%), Positives = 38/53 (71%)
Frame = +1
Query: 103 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSLNM 261
+K H+N+V IGHVD+GKST G +++ G +D R I+K+EKEA++ + S M
Sbjct: 98 KKRHLNVVFIGHVDAGKSTIGGQILFLSGQVDDRQIQKYEKEAKDKSRESWYM 150
Score = 35.9 bits (79), Expect = 0.022
Identities = 16/33 (48%), Positives = 25/33 (75%)
Frame = +1
Query: 514 TLGVKQLIVGVNKMDSTEPPYSEPRFEEIQKEV 612
TLGV +LIV VNKMD +S+ R++EI++++
Sbjct: 236 TLGVSKLIVVVNKMDDPTVNWSKERYDEIEQKM 268
>At4g20360.1 68417.m02971 elongation factor Tu / EF-Tu (TUFA)
identical to SWISS-PROT:P17745 elongation factor Tu,
chloroplast precursor (EF-Tu) [Arabidopsis thaliana]
Length = 476
Score = 57.6 bits (133), Expect = 6e-09
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
GITI+ A ++ET + +D PGH D++KNMITG +Q D A+L+V+ G
Sbjct: 127 GITINTATVEYETENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADG 178
Score = 37.9 bits (84), Expect = 0.005
Identities = 16/42 (38%), Positives = 24/42 (57%)
Frame = +1
Query: 100 KEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEK 225
++K H+NI IGHVD GK+T T L I +K+++
Sbjct: 75 RKKPHVNIGTIGHVDHGKTTLTAALTMALASIGSSVAKKYDE 116
>At4g02930.1 68417.m00399 elongation factor Tu, putative / EF-Tu,
putative similar to mitochondrial elongation factor Tu
[Arabidopsis thaliana] gi|1149571|emb|CAA61511
Length = 454
Score = 55.6 bits (128), Expect = 3e-08
Identities = 24/52 (46%), Positives = 35/52 (67%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
GITI A ++ET+K + +D PGH D++KNMITG +Q D +L+V+ G
Sbjct: 115 GITIATAHVEYETAKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSGPDG 166
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 100 KEKTHINIVVIGHVDSGKSTTT 165
+ K H+N+ IGHVD GK+T T
Sbjct: 63 RNKPHVNVGTIGHVDHGKTTLT 84
>At2g45030.1 68415.m05606 mitochondrial elongation factor, putative
similar to SP|P25039 Elongation factor G 1,
mitochondrial precursor (mEF-G-1) {Saccharomyces
cerevisiae}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03764: Elongation factor
G domain IV, PF00679: Elongation factor G C-terminus
Length = 754
Score = 35.5 bits (78), Expect = 0.029
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 479 NGQTREH 499
+ Q R +
Sbjct: 178 DRQMRRY 184
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 118 NIVVIGHVDSGKSTTTGHLIYKCGGI 195
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g45332.1 68414.m05195 mitochondrial elongation factor, putative
similar to mitochondrial elongation factor GI:3917 from
[Saccharomyces cerevisiae]
Length = 754
Score = 35.5 bits (78), Expect = 0.029
Identities = 22/67 (32%), Positives = 30/67 (44%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 478
GITI A Y V IID PGH DF + D A+L++ + G I+
Sbjct: 118 GITIQSAATYCTWKDYKVNIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITV 177
Query: 479 NGQTREH 499
+ Q R +
Sbjct: 178 DRQMRRY 184
Score = 27.9 bits (59), Expect = 5.9
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 118 NIVVIGHVDSGKSTTTGHLIYKCGGI 195
NI + H+DSGK+T T +++ G I
Sbjct: 67 NIGISAHIDSGKTTLTERVLFYTGRI 92
>At1g06220.2 68414.m00656 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 302 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At1g06220.1 68414.m00655 elongation factor Tu family protein
similar to Cryptosporidium parvum elongation factor-2
GB:U21667 GI:706974 from [Cryptosporidium parvum]
Length = 987
Score = 34.7 bits (76), Expect = 0.051
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = +2
Query: 302 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
+ + + L + Y I+D PGH +F M AD AVLIV A G
Sbjct: 195 VPMSLVLEDSRSKSYLCNIMDTPGHVNFSDEMTASLRLADGAVLIVDAAEG 245
>At5g39900.1 68418.m04839 GTP-binding protein LepA, putative
GTP-binding protein GUF1 - Saccharomyces cerevisiae,
PIR:S50374
Length = 661
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/41 (39%), Positives = 21/41 (51%)
Frame = +2
Query: 332 ETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
E S Y + +ID PGH DF + S A+L+V A G
Sbjct: 131 EASGYLLNLIDTPGHVDFSYEVSRSLSACQGALLVVDAAQG 171
>At3g22980.1 68416.m02898 elongation factor Tu family protein
similar to eukaryotic translation elongation factor 2
GB:NP_001952 [Homo sapiens]
Length = 1015
Score = 33.1 bits (72), Expect = 0.16
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +2
Query: 302 ITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
IT+ + + Y + +ID+PGH DF + T +D A+++V A G
Sbjct: 60 ITMKSSSISLKYKDYSLNLIDSPGHMDFCSEVSTAARLSDGALVLVDAVEG 110
Score = 32.7 bits (71), Expect = 0.21
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 118 NIVVIGHVDSGKSTTTGHLIYKCGG 192
NI ++ HVD GK+T HLI GG
Sbjct: 11 NICILAHVDHGKTTLADHLIASSGG 35
>At4g11160.1 68417.m01808 translation initiation factor IF-2,
mitochondrial, putative similar to SP|P46198|IF2M_BOVIN
Translation initiation factor IF-2, mitochondrial
precursor (IF-2Mt) (IF-2(Mt)) {Bos taurus}
Length = 743
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 350 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
+T +D PGH F + G + D VL+VAA G
Sbjct: 270 ITFLDTPGHAAFSEMRARGAAVTDIVVLVVAADDG 304
>At1g62750.1 68414.m07082 elongation factor Tu family protein
similar to elongation factor G SP:P34811 [Glycine max
(Soybean)]
Length = 783
Score = 32.7 bits (71), Expect = 0.21
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 106 KTHINIVVIGHVDSGKSTTTGHLIYKCG 189
K + NI ++ H+D+GK+TTT ++Y G
Sbjct: 94 KDYRNIGIMAHIDAGKTTTTERILYYTG 121
Score = 29.1 bits (62), Expect = 2.5
Identities = 17/52 (32%), Positives = 23/52 (44%)
Frame = +2
Query: 299 GITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
GITI A K+ + IID PGH DF + D A+ + + G
Sbjct: 146 GITITSAATTTFWDKHRINIIDTPGHVDFTLEVERALRVLDGAICLFDSVAG 197
>At4g18330.2 68417.m02719 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 471
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 335 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 445
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 88 PEMGKEKTHINIVVIGHVDSGKST 159
PE+ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At4g18330.1 68417.m02718 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to SP|Q09130 Eukaryotic translation
initiation factor 2 gamma subunit (eIF-2- gamma)
{Schizosaccharomyces pombe}; contains Pfam profile
PF00009: Elongation factor Tu GTP binding domain;
isoform predicted to contain a TG non-consensus acceptor
splice site.
Length = 284
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +2
Query: 335 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 445
T + +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 124 TLRRHVSCVDCPGHDILMATMLNGAAIVDGALLLIAA 160
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 88 PEMGKEKTHINIVVIGHVDSGKST 159
PE+ + INI IGHV GKST
Sbjct: 31 PEVISRQATINIGTIGHVAHGKST 54
>At2g18720.1 68415.m02180 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative
Length = 465
Score = 31.9 bits (69), Expect = 0.36
Identities = 13/33 (39%), Positives = 21/33 (63%)
Frame = +2
Query: 347 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 445
+V+ +D PGH + M+ G + D A+LI+AA
Sbjct: 120 HVSFVDCPGHDILMATMLNGAAIMDGALLIIAA 152
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 88 PEMGKEKTHINIVVIGHVDSGKST 159
PE+ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
>At1g04170.1 68414.m00407 eukaryotic translation initiation factor 2
subunit 3, putative / eIF2S3, putative / eIF-2-gamma,
putative similar to gb|U37354 from S. pombe. ESTs
gb|T41979, gb|N37284 and gb|N37529 come from this gene
Length = 465
Score = 31.9 bits (69), Expect = 0.36
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Frame = +2
Query: 329 FETSKY----YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAA 445
FE SK +V+ +D PGH + M+ G + D A+L++AA
Sbjct: 112 FENSKMKLLRHVSFVDCPGHDILMATMLNGAAIMDGALLLIAA 154
Score = 27.5 bits (58), Expect = 7.8
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 88 PEMGKEKTHINIVVIGHVDSGKST 159
PE+ + INI IGHV GKST
Sbjct: 25 PEVISRQATINIGTIGHVAHGKST 48
>At5g08650.1 68418.m01029 GTP-binding protein LepA, putative
Length = 681
Score = 31.1 bits (67), Expect = 0.63
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Frame = +2
Query: 299 GITIDIAL----WKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
GITI + + +E + + + +ID PGH DF + + + A+L+V A G
Sbjct: 133 GITIKLQAARMRYVYEDTPFCLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQG 188
Score = 28.3 bits (60), Expect = 4.4
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +1
Query: 118 NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 216
N +I H+D GKST L+ G + R +++
Sbjct: 88 NFSIIAHIDHGKSTLADKLLQVTGTVQNRDMKE 120
>At1g76825.1 68414.m08940 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profile PF00009: Elongation
factor Tu GTP binding domain
Length = 630
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 356 IIDAPGHRDFIKNMITGTSQADCAVLIV 439
+ID PGH F G+S D A+L+V
Sbjct: 113 VIDTPGHESFTNLRSRGSSLCDLAILVV 140
>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to IF2
protein [Drosophila melanogaster] GI:7108770; contains
Pfam profile PF03144: Elongation factor Tu domain 2
Length = 1294
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 356 IIDAPGHRDFIKNMITGTSQADCAVLIV 439
+ID PGH F G+S D A+L+V
Sbjct: 772 VIDTPGHESFTNLRSRGSSLCDLAILVV 799
>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1201
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +2
Query: 356 IIDAPGHRDFIKNMITGTSQADCAVLIV 439
+ID PGH F G+S D A+L+V
Sbjct: 705 VIDTPGHESFTNLRSRGSSLCDLAILVV 732
>At1g56070.1 68414.m06438 elongation factor 2, putative / EF-2,
putative similar to ELONGATION FACTOR 2 GB:O14460 from
[Schizosaccharomyces pombe]
Length = 843
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 338 SKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIV 439
++Y + +ID+PGH DF + D A+++V
Sbjct: 96 NEYLINLIDSPGHVDFSSEVTAALRITDGALVVV 129
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 118 NIVVIGHVDSGKSTTTGHLIYKCG 189
N+ VI HVD GKST T L+ G
Sbjct: 21 NMSVIAHVDHGKSTLTDSLVAAAG 44
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 29.5 bits (63), Expect = 1.9
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 350 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 439
+ +ID PGH F G++ D A+L+V
Sbjct: 558 ILVIDTPGHESFTNLRSRGSNLCDLAILVV 587
>At2g28000.1 68415.m03393 RuBisCO subunit binding-protein alpha
subunit, chloroplast / 60 kDa chaperonin alpha subunit /
CPN-60 alpha identical to SWISS-PROT:P21238- RuBisCO
subunit binding-protein alpha subunit, chloroplast
precursor (60 kDa chaperonin alpha subunit, CPN-60
alpha) [Arabidopsis thaliana]
Length = 586
Score = 28.3 bits (60), Expect = 4.4
Identities = 17/58 (29%), Positives = 29/58 (50%)
Frame = -1
Query: 442 SYDEHSAISLRGSCDHVLDEISVSRSINDGNIVLASFELPESNIDCDTXSRSAFSLSN 269
++D+HS +L+ D + D + ++ N+VL F P+ D T +R A L N
Sbjct: 52 AFDQHSRAALQAGIDKLADCVGLTLGPRGRNVVLDEFGSPKVVNDGVTIAR-AIELPN 108
>At1g17220.1 68414.m02098 translation initiation factor IF-2,
chloroplast, putative similar to SP|P57997|IF2C_PHAVU
Translation initiation factor IF-2, chloroplast
precursor (PvIF2cp) {Phaseolus vulgaris}
Length = 1026
Score = 27.9 bits (59), Expect = 5.9
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +2
Query: 359 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 454
+D PGH F G D A+++VAA G
Sbjct: 557 LDTPGHEAFGAMRARGARVTDIAIIVVAADDG 588
>At3g02600.1 68416.m00251 phosphatidic acid phosphatase family
protein / PAP2 family protein similar to phosphatidic
acid phosphatase [Mus musculus] GI:1487873; contains
Pfam profile: PF01569 phosphatase PAP2 superfamily
Length = 364
Score = 27.5 bits (58), Expect = 7.8
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Frame = -2
Query: 588 SGLTVWWFSGIHFVYSY----DELFDTEGERSKACSRV*PFL 475
SG T W FSG+ F+ Y + FD +G +K C + P L
Sbjct: 214 SGHTSWSFSGLGFLSLYLSGKIQAFDGKGHVAKLCIVILPLL 255
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,918,663
Number of Sequences: 28952
Number of extensions: 279594
Number of successful extensions: 808
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 808
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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