Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060811.seq
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   1.4  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    26   2.5  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   5.8  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    25   7.7  
SPAC26F1.09 |gyp51||GTPase activating protein Gyp51 |Schizosacch...    25   7.7  
SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase |Schiz...    25   7.7  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 1.4
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +3

Query: 6    KLGEVEKALTKRLNEMELSLKTDIIQLNDEN-DGRGSD 116
            K+G+    L KRL    L L+TD+++  + N DG   D
Sbjct: 997  KVGKFAHTLRKRLMREHLGLETDVLEQREYNMDGLDRD 1034


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQ 170
           KKL E EK   K++ E+E  L+ + I+L  E   R  +   K+ ++ +  R   +Q
Sbjct: 111 KKLREQEKIAAKKMKELE-KLEKERIRL-QEQQRRKEERDQKLREKEEAQRLRQEQ 164


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 103 PSFSSFSCIMSVFRLSSISFNRLVNAF 23
           PSFS + C+ S+F + + S N   + F
Sbjct: 71  PSFSFYLCVKSIFHVHNESVNIWTHLF 97


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -3

Query: 421 GEHXVSSLLTTFESDCHRMKCRTVDGFGCC 332
           GE  V S+L    +DC R  C+   GF  C
Sbjct: 165 GEKLVKSILA--HNDCVRSLCQIPGGFASC 192


>SPAC26F1.09 |gyp51||GTPase activating protein Gyp51
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1031

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -1

Query: 282 SPFATSVSSFLLRLHHRQDHRP 217
           SPF+T+VSS+L  L +  D  P
Sbjct: 519 SPFSTAVSSWLNPLRYPSDKSP 540


>SPBC27.08c |sua1|SPBC28F2.01c|sulfate adenylyltransferase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 24.6 bits (51), Expect = 7.7
 Identities = 22/77 (28%), Positives = 31/77 (40%), Gaps = 2/77 (2%)
 Frame = +3

Query: 30  LTKRLNEMEL-SLKT-DIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXAVESRTHA 203
           +T  LNE +  SLK  D + L D  DG+    I  + D+    +A   +       R H 
Sbjct: 79  ITLDLNESQADSLKAGDRVALLDPRDGQTVIAILTVEDKYTPDKANEAEKVFGANDRAHP 138

Query: 204 LVKDLVGGLADDVVAAK 254
            V  L G   +  V  K
Sbjct: 139 AVDYLFGRAGNVYVGGK 155


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,061
Number of Sequences: 5004
Number of extensions: 25150
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)