Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060811.seq
(471 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483 31 0.62
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 30 0.82
02_05_0830 + 32066419-32066676,32067779-32067820,32068375-320688... 30 1.1
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 29 1.4
12_02_0248 + 16413295-16414394,16416511-16416762,16416839-164170... 29 2.5
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 28 3.3
01_05_0701 - 24391404-24392261,24392385-24392867 28 3.3
03_02_0314 + 7398247-7400877 27 5.8
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 27 7.6
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587... 27 7.6
08_02_0854 - 21905054-21906308,21906396-21907300 27 7.6
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 27 7.6
>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
Length = 475
Score = 30.7 bits (66), Expect = 0.62
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -1
Query: 354 RWTGLAAATLAYDLETGARFIS---HASPFATSVSSFLLRLHH 235
RW G+AAA A DL+ A F + + FA + ++ L R HH
Sbjct: 69 RWRGVAAAAPALDLDFAAAFPAAPRRRAAFAAAATAALSRPHH 111
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 30.3 bits (65), Expect = 0.82
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +3
Query: 147 ETRAAMDQTTXAVESRTHALVKDLVGGLADDVVAAKKN 260
ETRAA + ++ + D++GG AD+V+A KN
Sbjct: 122 ETRAAYEALLSVIQQQFGGQPLDVLGGAADEVLAVLKN 159
>02_05_0830 +
32066419-32066676,32067779-32067820,32068375-32068875,
32069048-32069135,32069251-32069303,32069499-32069603,
32069886-32069961,32070038-32070075,32070162-32070242,
32070353-32070364
Length = 417
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Frame = +3
Query: 126 KIIDRXDETRAAMDQTTXAVESRTHAL-VKDLVGGLADDVVAAKKNL--RRSQK 278
K R + R A++ AVES HAL ++ GG+ ++ AAKK + RR Q+
Sbjct: 342 KAFFRQGQARIALNDIDAAVESFKHALQLEPNDGGIKRELAAAKKKIADRRDQE 395
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 29.5 bits (63), Expect = 1.4
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 3/63 (4%)
Frame = -1
Query: 342 LAAATLAYDLETGARFISHASPFATSVSSFLLRLHHRQDHRPDP*RERA---FDSRPXRS 172
LA L+YD+ ARFIS P++T+ + Q H D +E A FD + +
Sbjct: 593 LATCDLSYDVRDRARFISRLLPYSTTYLNG--NNSSCQSHNEDMFKELANHIFDGKMPST 650
Query: 171 FDP 163
F P
Sbjct: 651 FHP 653
>12_02_0248 +
16413295-16414394,16416511-16416762,16416839-16417055,
16417216-16417353,16417493-16417669,16417744-16417851,
16417925-16418392,16418493-16418570,16418673-16418756
Length = 873
Score = 28.7 bits (61), Expect = 2.5
Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 5/52 (9%)
Frame = -2
Query: 296 LYRMPVLLRPP*VLFCCDYIIGKTT---DQILDESVRSTLDR--XGRLIHGS 156
L+ PVL+RPP V+ Y +G+ + DQ +R +LDR GR H S
Sbjct: 250 LHPHPVLVRPPVVIAGVAYFLGEMSGRDDQTYQLLLRMSLDRESLGRQYHHS 301
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 28.3 bits (60), Expect = 3.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 117 MIDKII--DRXDETRAAMDQTTXAVESRTHALVKDLVGGLADDVVAAKKN 260
+ID ++ R ETRAA + ++ + D++G AD+V+A N
Sbjct: 114 LIDDVVYRPRTKETRAAYEALLSVIQRQLGGQPPDVLGSAADEVLAILNN 163
>01_05_0701 - 24391404-24392261,24392385-24392867
Length = 446
Score = 28.3 bits (60), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -3
Query: 109 PRPSFSSFSCIMSVFRLSSISFNRLVNAFSTSPS 8
P PSF++F+ + V +S S R+ FS SP+
Sbjct: 225 PPPSFTAFNFVTQVVDVSPESIARIKEDFSASPT 258
>03_02_0314 + 7398247-7400877
Length = 876
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -1
Query: 102 RHFRRSVVLCLFLDLAPSRLIV*SMPFPPLPA 7
RHF RS F DL P + + P PP PA
Sbjct: 68 RHFVRSTSFLPFADLDPLSGALLTAPSPPFPA 99
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 30 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRXDETRAAMDQTTXAVES 191
LT L+ + ++ D + +DE+D G+ +M+D D+ E + A ++ +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 192 RTHALVKDLVGGLADDVVA 248
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
>08_02_1091 + 24256025-24256190,24256806-24257978,24258066-24258733,
24258994-24260065,24260241-24260563,24260647-24260835,
24261400-24261506,24262103-24262163,24262617-24262634
Length = 1258
Score = 27.1 bits (57), Expect = 7.6
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +3
Query: 18 VEKALTKRLNEMELSLKTDIIQLNDENDGR-GSDMIDKIIDRXDETRAAMDQTTXAVESR 194
V++ ++L +ME KTD + E+DGR + K I+ + + + + A SR
Sbjct: 1067 VKQEREQKLKQMEQKKKTDARKRQWEDDGRKEKEKKKKFIEEPRKQQKQLGERMHAGNSR 1126
Query: 195 THALVKD 215
A KD
Sbjct: 1127 EDASQKD 1133
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 30 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRXDETRAAMDQTTXAVES 191
LT L+ + ++ D + +DE+D G+ +M+D D+ E + A ++ +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 192 RTHALVKDLVGGLADDVVA 248
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 27.1 bits (57), Expect = 7.6
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 6/79 (7%)
Frame = +3
Query: 30 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRXDETRAAMDQTTXAVES 191
LT L+ + ++ D + +DE+D G+ +M+D D+ E + A ++ +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 192 RTHALVKDLVGGLADDVVA 248
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,799,046
Number of Sequences: 37544
Number of extensions: 196369
Number of successful extensions: 562
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 562
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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