Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060811.seq
         (471 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_4107| Best HMM Match : M (HMM E-Value=8e-22)                        36   0.013
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.36 
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.64 
SB_51436| Best HMM Match : Neuromodulin (HMM E-Value=6.2)              31   0.64 
SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_52474| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.9  
SB_10430| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.8  

>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
          Length = 2039

 Score = 36.3 bits (80), Expect = 0.013
 Identities = 20/71 (28%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = +3

Query: 15  EVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMID--KIIDRXDETRAAMDQTTXAVE 188
           E+E  + K  +E E++L+  +++L   N+G G D ++  KII + +  + A+ Q    VE
Sbjct: 636 ELELEIGKMKSE-EIALRDALVKLQSLNEGLGQDKLELNKIIRQMEAEKLAITQEKRDVE 694

Query: 189 SRTHALVKDLV 221
           +  H++ ++L+
Sbjct: 695 AEKHSIRQELI 705


>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1062

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
 Frame = +3

Query: 48  EMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMD------QTTXAVESRTHALV 209
           E EL +K + +  +DE  GR  D  DKI+D   +    +D      +T     ++ HA++
Sbjct: 232 EDELMMKAETLMKDDE--GRNDDT-DKILDAFLQWLQGIDGGRRELRTAKQYVAQVHAII 288

Query: 210 KDLVGGLADDVVAAKKNLR 266
           KD    L  D +  KK+LR
Sbjct: 289 KDDPDELRIDSILNKKHLR 307


>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 27   ALTKRLNEMELSLKTDIIQLNDENDGRGSD 116
            A+ +RLNE+ +S +TD+ +LN+ N   G++
Sbjct: 916  AVLRRLNEVSVSPQTDLFELNNNNVDSGAE 945


>SB_51436| Best HMM Match : Neuromodulin (HMM E-Value=6.2)
          Length = 359

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 12/30 (40%), Positives = 22/30 (73%)
 Frame = +3

Query: 27  ALTKRLNEMELSLKTDIIQLNDENDGRGSD 116
           A+ +RLNE+ +S +TD+ +LN+ N   G++
Sbjct: 202 AVLRRLNEVSVSPQTDLFELNNNNVDSGAE 231


>SB_41259| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 19/74 (25%), Positives = 35/74 (47%)
 Frame = +3

Query: 57  LSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXAVESRTHALVKDLVGGLAD 236
           L L  D I+      G+G D  ++ +   +  +  +     A+E+R  AL+K+L G L  
Sbjct: 194 LELLQDRIKARARAAGQGEDDAERSLKSDNLQKEQLQTHNMALETRLAALIKEL-GKLRS 252

Query: 237 DVVAAKKNLRRSQK 278
           +    ++ L+  QK
Sbjct: 253 EKSDLEERLQSMQK 266


>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 756

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 4/59 (6%)
 Frame = +3

Query: 123 DKIIDRXDETRAAMDQTTXAVE----SRTHALVKDLVGGLADDVVAAKKNLRRSQKDWH 287
           +K+  +  E +  +DQ    +E    S+ H L+K L     +DV   +K LR+ ++D+H
Sbjct: 661 EKLESKITENKRQLDQLRKQLEQVDLSKKHELLKKL-----EDVEKEQKKLRKEEEDFH 714


>SB_52474| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 295

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 16/27 (59%), Positives = 17/27 (62%)
 Frame = -1

Query: 261 SSFLLRLHHRQDHRPDP*RERAFDSRP 181
           S FLLRL  RQ HR    RE  FD+RP
Sbjct: 42  SLFLLRLE-RQQHRSALSREIIFDTRP 67


>SB_10430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 57

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 14/52 (26%), Positives = 31/52 (59%), Gaps = 1/52 (1%)
 Frame = +3

Query: 75  IIQLNDENDGRGS-DMIDKIIDRXDETRAAMDQTTXAVESRTHALVKDLVGG 227
           ++ +ND++DG GS D +  +++  ++  +A DQ    V++   A ++  +GG
Sbjct: 7   VVMINDDDDGGGSDDNVRNMLNNIEKCLSAADQ--EIVDAYMAARLEQSMGG 56


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,795,571
Number of Sequences: 59808
Number of extensions: 204644
Number of successful extensions: 494
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 494
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)