Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060811.seq
         (471 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U22816-1|AAC50173.1| 1202|Homo sapiens LAR-interacting protein 1...    30   4.6  
U22815-1|AAC50172.1| 1185|Homo sapiens LAR-interacting protein 1...    30   4.6  
BC034046-1|AAH34046.1| 1202|Homo sapiens protein tyrosine phosph...    29   8.1  

>U22816-1|AAC50173.1| 1202|Homo sapiens LAR-interacting protein 1b
           protein.
          Length = 1202

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDE-TRAAMDQTTX 179
           ++L ++E  L ++  E++ + + +  ++N+E++ R SD +DK++   +E  +  + +   
Sbjct: 414 ERLRQMEAQLEEKNQELQRARQRE--KMNEEHNKRLSDTVDKLLSESNERLQLHLKERMA 471

Query: 180 AVESRTHALVKDLVGGLADDVVAAKKNLRRSQKD 281
           A+E +           L  +V +AKK L  +Q D
Sbjct: 472 ALEDK---------NSLLREVESAKKQLEETQHD 496


>U22815-1|AAC50172.1| 1185|Homo sapiens LAR-interacting protein 1a
           protein.
          Length = 1185

 Score = 29.9 bits (64), Expect = 4.6
 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDE-TRAAMDQTTX 179
           ++L ++E  L ++  E++ + + +  ++N+E++ R SD +DK++   +E  +  + +   
Sbjct: 414 ERLRQMEAQLEEKNQELQRARQRE--KMNEEHNKRLSDTVDKLLSESNERLQLHLKERMA 471

Query: 180 AVESRTHALVKDLVGGLADDVVAAKKNLRRSQKD 281
           A+E +           L  +V +AKK L  +Q D
Sbjct: 472 ALEDK---------NSLLREVESAKKQLEETQHD 496


>BC034046-1|AAH34046.1| 1202|Homo sapiens protein tyrosine
           phosphatase, receptor type, f polypeptide (PTPRF),
           interacting protein.
          Length = 1202

 Score = 29.1 bits (62), Expect = 8.1
 Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDE-TRAAMDQTTX 179
           ++L ++E  L ++  E++ + + +  ++N+E++ R SD +DK++   +E  +  + +   
Sbjct: 414 ERLRQMEAQLEEKNQELQRARQRE--KMNEEHNKRLSDTVDKLLSESNERLQLHLKERMA 471

Query: 180 AVESRTHALVKDLVGGLADDVVAAKKNLRRSQKD 281
           A+E +           L  +V +AKK L  +Q D
Sbjct: 472 ALEDK---------NSLLREVESAKKQLEGTQHD 496


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 54,347,349
Number of Sequences: 237096
Number of extensions: 931646
Number of successful extensions: 1864
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1842
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1864
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)