Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060811.seq
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006651-12|AAM48541.1|  231|Caenorhabditis elegans Hypothetical...    33   0.14 
AC006651-11|AAM48540.1|  428|Caenorhabditis elegans Hypothetical...    33   0.14 
AC006651-10|AAF39866.2|  456|Caenorhabditis elegans Hypothetical...    33   0.14 
AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical...    30   0.96 
AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans hom...    27   9.0  
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl...    27   9.0  

>AC006651-12|AAM48541.1|  231|Caenorhabditis elegans Hypothetical
           protein H06I04.1c protein.
          Length = 231

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXA 182
           K L E  +AL+++    +L  KT  I  ++  + +  D+IDK+ID  +  + ++++    
Sbjct: 66  KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 125

Query: 183 VESRTHALVK 212
             S    L K
Sbjct: 126 TSSLQDDLEK 135


>AC006651-11|AAM48540.1|  428|Caenorhabditis elegans Hypothetical
           protein H06I04.1b protein.
          Length = 428

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXA 182
           K L E  +AL+++    +L  KT  I  ++  + +  D+IDK+ID  +  + ++++    
Sbjct: 263 KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 322

Query: 183 VESRTHALVK 212
             S    L K
Sbjct: 323 TSSLQDDLEK 332


>AC006651-10|AAF39866.2|  456|Caenorhabditis elegans Hypothetical
           protein H06I04.1a protein.
          Length = 456

 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/70 (25%), Positives = 35/70 (50%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXA 182
           K L E  +AL+++    +L  KT  I  ++  + +  D+IDK+ID  +  + ++++    
Sbjct: 263 KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 322

Query: 183 VESRTHALVK 212
             S    L K
Sbjct: 323 TSSLQDDLEK 332


>AF067608-11|AAC17656.2|  368|Caenorhabditis elegans Hypothetical
           protein B0511.11 protein.
          Length = 368

 Score = 29.9 bits (64), Expect = 0.96
 Identities = 20/68 (29%), Positives = 30/68 (44%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXA 182
           KK   +EK LT   NE+     +   +L+          +DKIID   +   A+D+ T A
Sbjct: 171 KKHAAIEKCLTPEENEVLAKFFSGKQKLDSNVLAVLDSALDKIIDYLQKNNCAVDEETKA 230

Query: 183 VESRTHAL 206
           V  +   L
Sbjct: 231 VMKKRDKL 238


>AC025723-8|AAK29942.1| 1273|Caenorhabditis elegans C.elegans
           homeobox protein 44,isoform a protein.
          Length = 1273

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 22/88 (25%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
 Frame = +3

Query: 3   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRA--AMDQTT 176
           ++LGE  + L + L E    L+ +   L   NDG   D + K I     +R    + +  
Sbjct: 372 ERLGETVETLDRLLAEKNRRLQNENASLRVANDGFKGDEVMKAIVSGSHSRVVETVGKRV 431

Query: 177 XAVESRTHALVKDLVGGLADDVVAAKKN 260
            A E+ ++   K+    L + +  AK+N
Sbjct: 432 GAEEANSYR-QKNTDSELIEKIQEAKRN 458


>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
            anchorage protein1 protein.
          Length = 8545

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 18/50 (36%), Positives = 26/50 (52%)
 Frame = +3

Query: 6    KLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRXDETR 155
            +L E++K     LNE  L+L      L  E+D  GS++ DKI+   D  R
Sbjct: 2817 ELAEIQKMPADSLNEHALNL------LATESDKFGSEISDKIMQEIDVLR 2860


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,583,599
Number of Sequences: 27780
Number of extensions: 147156
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)