Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060811.seq
         (471 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr...    29   1.6  
At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37) iden...    27   4.8  
At2g02880.1 68415.m00238 mucin-related similar to putative mucin...    27   4.8  
At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein heli...    27   6.4  
At4g10430.3 68417.m01715 expressed protein                             27   8.5  
At4g10430.1 68417.m01714 expressed protein                             27   8.5  
At4g00920.1 68417.m00125 COP1-interacting protein-related simila...    27   8.5  

>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
           protein / U-box domain-containing protein contains Pfam
           domain, PF00514: Armadillo/beta-catenin-like repeats and
           Pfam, PF04564: U-box domain
          Length = 556

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 9   LGEVEKALTKRLNEME---LSLKTDIIQLNDENDGRGSDMIDKIIDRXDETRA 158
           L EVE+  T+R  E     L L  + +  +DE DG GS   D++ID     R+
Sbjct: 486 LKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVIDSNGSIRS 538


>At3g54170.1 68416.m05988 FKBP12 interacting protein (FIP37)
           identical to FKBP12 interacting protein (FIP37)
           GI:3859944 from [Arabidopsis thaliana]
          Length = 330

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 28/112 (25%), Positives = 46/112 (41%), Gaps = 5/112 (4%)
 Frame = +3

Query: 51  MELSLKTDIIQLNDE--NDGRGSDMIDKIIDRXDETRAAMDQTTXAVESRTHALVKDLVG 224
           ME S + D    +D   N  R S       D  D+       TT A   RT  ++  L G
Sbjct: 1   MEFSSQDDDFGGDDSAANATRASGNRRSFGDLEDDEDDIFGSTTVAPGVRT-GMILSLRG 59

Query: 225 GLA---DDVVAAKKNLRRSQKDWHAI*T*LQSPSHTPASQQPNPSTVLHFIR 371
            L    DD+ + +  L  ++ +     +  Q+ S  PA + P P  ++ +I+
Sbjct: 60  SLKNCKDDLASCQNELESAKTEIQKWKSAFQNESFVPAGKSPEPRFLIDYIQ 111


>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
           GI:18071389 [Oryza sativa]
          Length = 314

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +3

Query: 66  KTDIIQLNDENDGRGSDMIDKIIDRXDETRAAMDQTTXAVESRTHALVKDLVGG 227
           K +  +L+D   G G+D ID+++D   E   ++D     +E  + + +K+   G
Sbjct: 160 KLEEAKLDDSGSGGGADDIDRLLDSCSEIFDSVDHDFDKLEVSSGSELKNKPDG 213


>At1g20960.1 68414.m02624 U5 small nuclear ribonucleoprotein
           helicase, putative similar to SP|O75643 U5 small nuclear
           ribonucleoprotein 200 kDa helicase {Homo sapiens};
           contains Pfam profiles PF00270: DEAD/DEAH box helicase,
           PF00271: Helicase conserved C-terminal domain, PF02889:
           Sec63 domain
          Length = 2171

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 147 ETRAAMDQTTXAVESRTHALVKDLVGGLADDVVAAKKN 260
           ETRAA +     ++ +       +V G AD+++A  KN
Sbjct: 116 ETRAAYEAMLGLIQKQLGGQPPSIVSGAADEILAVLKN 153


>At4g10430.3 68417.m01715 expressed protein
          Length = 347

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = -3

Query: 469 INLKSSASGVD---RPLHP----GEHXVSSLLTTFESDCHRMKCRTVDG 344
           ++L+  AS VD   R LH      ++    L+   E D HR +C  VDG
Sbjct: 33  LSLRQKASAVDSSIRRLHSTIVSNKNLDPKLVEKLEEDLHRARCMLVDG 81


>At4g10430.1 68417.m01714 expressed protein
          Length = 347

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 7/49 (14%)
 Frame = -3

Query: 469 INLKSSASGVD---RPLHP----GEHXVSSLLTTFESDCHRMKCRTVDG 344
           ++L+  AS VD   R LH      ++    L+   E D HR +C  VDG
Sbjct: 33  LSLRQKASAVDSSIRRLHSTIVSNKNLDPKLVEKLEEDLHRARCMLVDG 81


>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
           to COP1-interacting protein 4 (CIP4) [Arabidopsis
           thaliana] GI:13160646
          Length = 314

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 12  GEVEK-ALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIID 137
           G VE  A+ K L + E S+ TDI  ++DEN+    D +  + D
Sbjct: 156 GVVEPFAIGKDLEKGEKSVATDIALVDDENESHKDDDVRVVED 198


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,271,508
Number of Sequences: 28952
Number of extensions: 143089
Number of successful extensions: 417
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 417
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)