Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060810.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    24   0.91 
AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory recept...    24   0.91 
DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase rever...    21   8.5  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    21   8.5  
AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase ...    21   8.5  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    21   8.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   8.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   8.5  

>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 410 VSSLLTTFESDCHRMKCRTVDGF 342
           V +L T  E +C++MK  T+D F
Sbjct: 253 VKTLTTVVEKECYKMKV-TIDAF 274


>AM292333-1|CAL23145.2|  316|Tribolium castaneum gustatory receptor
           candidate 12 protein.
          Length = 316

 Score = 24.2 bits (50), Expect = 0.91
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 410 VSSLLTTFESDCHRMKCRTVDGF 342
           V +L T  E +C++MK  T+D F
Sbjct: 179 VKTLTTVVEKECYKMKV-TIDAF 200


>DQ494421-1|ABF55372.1|   73|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 73

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 522 EERKKVPEIIESRGDGLVVAPMKN 593
           + R+K P+I+ S+ + ++   +KN
Sbjct: 10  KSRQKAPKIVNSKYNSILNIALKN 33


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 522 EERKKVPEIIESRGDGLVVAPMKN 593
           + R+K P+I+ S+ + ++   +KN
Sbjct: 10  KSRQKAPKIVNSKYNSILNIALKN 33


>AY362544-1|AAQ63456.1|  268|Tribolium castaneum chitin synthase
           protein.
          Length = 268

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  DENDGRGSDMIDKIIDRIDETRAAMDQTTEAV 186
           D+ND   ++ ++ +   IDE    +  TT  V
Sbjct: 52  DDNDPHVNEYVESLASIIDEAATKVHGTTVRV 83


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  DENDGRGSDMIDKIIDRIDETRAAMDQTTEAV 186
           D+ND   ++ ++ +   IDE    +  TT  V
Sbjct: 366 DDNDPHVNEYVESLASIIDEAATKVHGTTVRV 397


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  DENDGRGSDMIDKIIDRIDETRAAMDQTTEAV 186
           D+ND   ++ ++ +   IDE    +  TT  V
Sbjct: 599 DDNDPHVNEYVESLASIIDEAATKVHGTTVRV 630


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +1

Query: 91  DENDGRGSDMIDKIIDRIDETRAAMDQTTEAV 186
           D+ND   ++ ++ +   IDE    +  TT  V
Sbjct: 599 DDNDPHVNEYVESLASIIDEAATKVHGTTVRV 630


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,777
Number of Sequences: 336
Number of extensions: 2208
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)