Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060810.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr 1|...    27   2.2  
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po...    27   3.0  
SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyce...    26   5.2  
SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit S18...    25   6.8  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    25   6.8  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   6.8  
SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyce...    25   9.0  
SPBC16D10.01c ||SPBC418.03c|conserved fungal protein|Schizosacch...    25   9.0  

>SPAC2F7.16c |||phospholipase D |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1369

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
 Frame = +1

Query: 7    KLGEVEKALTKRLNEMELSLKTDIIQLNDEN-DGRGSD 117
            K+G+    L KRL    L L+TD+++  + N DG   D
Sbjct: 997  KVGKFAHTLRKRLMREHLGLETDVLEQREYNMDGLDRD 1034


>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -2

Query: 422 GEHLVSSLLTTFESDCHRMKCRTVDGFGCC 333
           GE LV S+L    +DC R  C+   GF  C
Sbjct: 165 GEKLVKSILA--HNDCVRSLCQIPGGFASC 192


>SPAC26H5.05 |||IPT/TIG ankyrin repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1151

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
 Frame = +1

Query: 316 SHTPASQQPNPSTVLHFIRW---QSLSKVVRRLLTRC 417
           S  P   QP+P TV+H +        S VV+   TRC
Sbjct: 286 SSKPQPLQPDPETVIHLVPTVLAGDKSSVVKTCCTRC 322


>SPAC1B3.18c |mrps18||mitochondrial ribosomal protein subunit
           S18|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 223

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 164 WIKRPRRSRVERTLSSRIWSVVLPMM*SQQT 256
           W + PRR+  ++ LSS + S + P   S++T
Sbjct: 59  WSQSPRRNAPKKELSSLLESTITPKAFSKRT 89


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = -2

Query: 605 ERALVLHGRYYQXIPTTLYYLWDFLSFLLGVATNIIVWFFA 483
           ER L     Y       L+  W+F+SF L  A NI  W  +
Sbjct: 38  ERMLTNKDLYPVPPSKRLWGPWNFISFWLADAVNINTWMIS 78


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 17/56 (30%), Positives = 29/56 (51%)
 Frame = +1

Query: 4   KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
           KKL E EK   K++ E+E  L+ + I+L  E   R  +   K+ ++ +  R   +Q
Sbjct: 111 KKLREQEKIAAKKMKELE-KLEKERIRL-QEQQRRKEERDQKLREKEEAQRLRQEQ 164


>SPBC12C2.09c |||Haemolysin-III family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 324

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -2

Query: 104 PSFSSFSCIMSVFRLSSISFNRLVNAF 24
           PSFS + C+ S+F + + S N   + F
Sbjct: 71  PSFSFYLCVKSIFHVHNESVNIWTHLF 97


>SPBC16D10.01c ||SPBC418.03c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/70 (24%), Positives = 31/70 (44%)
 Frame = +1

Query: 7   KLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAV 186
           +L E+ + L K      L L       + + DGR  +++ ++   + + + A     EAV
Sbjct: 7   ELLEIREKLVKDETSEALILAKKAADKSPKEDGRAFELLGEVYAELADVKKARSAFKEAV 66

Query: 187 ESRTHALVKD 216
            SR+  L  D
Sbjct: 67  -SRSKNLTND 75


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,213,421
Number of Sequences: 5004
Number of extensions: 38210
Number of successful extensions: 116
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)