Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060810.seq
(630 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0353 + 42962769-42962972,42963062-42963138,42963571-429638... 33 0.25
05_01_0335 + 2652334-2652340,2652459-2652550,2652642-2653362,265... 31 0.57
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483 31 0.57
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 30 1.3
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121 29 2.3
08_02_0854 - 21905054-21906308,21906396-21907300 29 2.3
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990 29 2.3
01_06_0185 - 27293280-27293606 29 3.0
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 28 5.3
01_05_0701 - 24391404-24392261,24392385-24392867 28 5.3
06_01_0089 + 715820-716085,716178-717015 28 7.0
04_04_1363 - 32898345-32898371,32898986-32899837,32900234-329005... 28 7.0
12_02_0719 + 22500217-22500395,22500506-22500551,22500671-225007... 27 9.3
03_02_0314 + 7398247-7400877 27 9.3
>01_07_0353 +
42962769-42962972,42963062-42963138,42963571-42963817,
42963907-42964476,42964998-42965171,42965514-42965640,
42965719-42965828,42966707-42966907,42966999-42967966,
42968110-42968358,42968760-42969105
Length = 1090
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/63 (34%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Frame = -3
Query: 343 LAAATLAYDLETGARFISHASPFATSVSSCLLRLHHRQDHRPDP*RERA---FDSRPPRS 173
LA L+YD+ ARFIS P++T+ + Q H D +E A FD + P +
Sbjct: 593 LATCDLSYDVRDRARFISRLLPYSTTYLNG--NNSSCQSHNEDMFKELANHIFDGKMPST 650
Query: 172 FDP 164
F P
Sbjct: 651 FHP 653
>05_01_0335 +
2652334-2652340,2652459-2652550,2652642-2653362,
2653456-2653533,2653658-2653684,2653871-2653938,
2654089-2654174,2654251-2654333,2654478-2654620,
2654709-2654810,2654906-2655199,2655282-2655404,
2655733-2656119
Length = 736
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/50 (34%), Positives = 28/50 (56%)
Frame = +2
Query: 464 KLIRYARRKTKLLYWLRHRGGKKESPRDNRESWGWXGSSAHEEQEPSRCP 613
K R ++K + L W++H+GGK +S + S SS EE++P + P
Sbjct: 15 KEARSEKQKLRFLSWVQHQGGKSKSKKPVEPS---VESSPVEEKKPKKEP 61
>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
Length = 475
Score = 31.5 bits (68), Expect = 0.57
Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Frame = -3
Query: 355 RWTGLAAATLAYDLETGARFIS---HASPFATSVSSCLLRLHH 236
RW G+AAA A DL+ A F + + FA + ++ L R HH
Sbjct: 69 RWRGVAAAAPALDLDFAAAFPAAPRRRAAFAAAATAALSRPHH 111
>02_01_0055 +
410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = +1
Query: 148 ETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAANKN 261
ETRAA + ++ + D++GG AD+V+A KN
Sbjct: 122 ETRAAYEALLSVIQQQFGGQPLDVLGGAADEVLAVLKN 159
>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
Length = 798
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 31 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRIDETRAAMDQTTEAVES 192
LT L+ + ++ D + +DE+D G+ +M+D D++ E + A ++ + +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 193 RTHALVKDLVGGLADDVVA 249
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
>08_02_0854 - 21905054-21906308,21906396-21907300
Length = 719
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 31 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRIDETRAAMDQTTEAVES 192
LT L+ + ++ D + +DE+D G+ +M+D D++ E + A ++ + +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 193 RTHALVKDLVGGLADDVVA 249
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
Length = 798
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 6/79 (7%)
Frame = +1
Query: 31 LTKRLNEMELSLKT-DIIQLNDEND-----GRGSDMIDKIIDRIDETRAAMDQTTEAVES 192
LT L+ + ++ D + +DE+D G+ +M+D D++ E + A ++ + +
Sbjct: 192 LTSSLDVVRFLIEQGDAFRGHDESDTSLSKGKFKEMVDWYKDKVPEVKDAYEKGLKNCQM 251
Query: 193 RTHALVKDLVGGLADDVVA 249
+H + KDL A+ V A
Sbjct: 252 VSHHIQKDLTKACAEKVTA 270
>01_06_0185 - 27293280-27293606
Length = 108
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 512 RHRGGKKESPRDNRESWGWXGSSAHEEQEPSR 607
++ GG K++ R +E WG G A ++P R
Sbjct: 31 KNEGGAKDTERGKKERWGSGGGGAVGARQPHR 62
>03_05_1091 +
30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 28.3 bits (60), Expect = 5.3
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +1
Query: 118 MIDKII--DRIDETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAANKN 261
+ID ++ R ETRAA + ++ + D++G AD+V+A N
Sbjct: 114 LIDDVVYRPRTKETRAAYEALLSVIQRQLGGQPPDVLGSAADEVLAILNN 163
>01_05_0701 - 24391404-24392261,24392385-24392867
Length = 446
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = -2
Query: 110 PRPSFSSFSCIMSVFRLSSISFNRLVNAFSTSPS 9
P PSF++F+ + V +S S R+ FS SP+
Sbjct: 225 PPPSFTAFNFVTQVVDVSPESIARIKEDFSASPT 258
>06_01_0089 + 715820-716085,716178-717015
Length = 367
Score = 27.9 bits (59), Expect = 7.0
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -3
Query: 616 FRTTRGLLFFMGATTXPSPRLSIISGTFFLSS 521
F+ +GLL + +TT P P +++ GT ++S
Sbjct: 169 FQILQGLLRVLASTTAPPPTAAVLPGTDLMTS 200
>04_04_1363 -
32898345-32898371,32898986-32899837,32900234-32900500,
32900723-32901025,32902329-32902433,32903361-32903548,
32903628-32903721
Length = 611
Score = 27.9 bits (59), Expect = 7.0
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +2
Query: 515 HRGGKKESPRDNRESWGWXGSSAHEEQEPSRC 610
H G + + PRD R GS EEQ P++C
Sbjct: 177 HDGEEDDDPRDGRSDGDTAGSRG-EEQPPAQC 207
>12_02_0719 +
22500217-22500395,22500506-22500551,22500671-22500745,
22500846-22500932,22501077-22501148,22501267-22501338,
22501448-22501519,22501644-22502510
Length = 489
Score = 27.5 bits (58), Expect = 9.3
Identities = 21/84 (25%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Frame = +1
Query: 16 EVEKALTKRLNEMELSLKTDIIQLN-DENDGRGSDMI------DKIIDRIDETRAAMDQT 174
E E+ +RL+++ +L D +++ + +DG+ +D + D+++ D+ +
Sbjct: 72 EGEQGDAQRLHQIYQNLSRDNVEVGVNGSDGKATDELYQIQKDDEVVPNGDKI-VLSELV 130
Query: 175 TEAVESRTHALVKDLVGGLADDVV 246
TEAVE H +KD D +V
Sbjct: 131 TEAVEKYDHGSIKDCAEIAPDGMV 154
>03_02_0314 + 7398247-7400877
Length = 876
Score = 27.5 bits (58), Expect = 9.3
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = -3
Query: 103 RHFRRSVVLCLFLDLAPSRLIV*SMPFPPLPA 8
RHF RS F DL P + + P PP PA
Sbjct: 68 RHFVRSTSFLPFADLDPLSGALLTAPSPPFPA 99
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,541,965
Number of Sequences: 37544
Number of extensions: 292920
Number of successful extensions: 886
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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