Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060810.seq
(630 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_4107| Best HMM Match : M (HMM E-Value=8e-22) 38 0.009
SB_10430| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.0
SB_51436| Best HMM Match : Neuromodulin (HMM E-Value=6.2) 31 1.0
SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_17496| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.5
>SB_4107| Best HMM Match : M (HMM E-Value=8e-22)
Length = 2039
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 2/71 (2%)
Frame = +1
Query: 16 EVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMID--KIIDRIDETRAAMDQTTEAVE 189
E+E + K +E E++L+ +++L N+G G D ++ KII +++ + A+ Q VE
Sbjct: 636 ELELEIGKMKSE-EIALRDALVKLQSLNEGLGQDKLELNKIIRQMEAEKLAITQEKRDVE 694
Query: 190 SRTHALVKDLV 222
+ H++ ++L+
Sbjct: 695 AEKHSIRQELI 705
>SB_10430| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 57
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/52 (30%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Frame = +1
Query: 76 IIQLNDENDGRGS-DMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVGG 228
++ +ND++DG GS D + +++ I++ +A DQ E V++ A ++ +GG
Sbjct: 7 VVMINDDDDGGGSDDNVRNMLNNIEKCLSAADQ--EIVDAYMAARLEQSMGG 56
>SB_25942| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1062
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/79 (30%), Positives = 39/79 (49%), Gaps = 6/79 (7%)
Frame = +1
Query: 49 EMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMD------QTTEAVESRTHALV 210
E EL +K + + +DE GR D DKI+D + +D +T + ++ HA++
Sbjct: 232 EDELMMKAETLMKDDE--GRNDDT-DKILDAFLQWLQGIDGGRRELRTAKQYVAQVHAII 288
Query: 211 KDLVGGLADDVVAANKNLR 267
KD L D + K+LR
Sbjct: 289 KDDPDELRIDSILNKKHLR 307
>SB_58507| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2353
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 28 ALTKRLNEMELSLKTDIIQLNDENDGRGSD 117
A+ +RLNE+ +S +TD+ +LN+ N G++
Sbjct: 916 AVLRRLNEVSVSPQTDLFELNNNNVDSGAE 945
>SB_51436| Best HMM Match : Neuromodulin (HMM E-Value=6.2)
Length = 359
Score = 30.7 bits (66), Expect = 1.0
Identities = 12/30 (40%), Positives = 22/30 (73%)
Frame = +1
Query: 28 ALTKRLNEMELSLKTDIIQLNDENDGRGSD 117
A+ +RLNE+ +S +TD+ +LN+ N G++
Sbjct: 202 AVLRRLNEVSVSPQTDLFELNNNNVDSGAE 231
>SB_12581| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 756
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Frame = +1
Query: 124 DKIIDRIDETRAAMDQTTEAVE----SRTHALVKDLVGGLADDVVAANKNLRRSQKDWH 288
+K+ +I E + +DQ + +E S+ H L+K L +DV K LR+ ++D+H
Sbjct: 661 EKLESKITENKRQLDQLRKQLEQVDLSKKHELLKKL-----EDVEKEQKKLRKEEEDFH 714
>SB_36968| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 479 ARRKTKLLYWLRHRGGKKESPRDNRESWGWXGSSAHEEQEPSR 607
A+R+T L W+ R G+K +NR+ SS+ E + SR
Sbjct: 11 AKRETSLPEWIIDRDGEKHDYGNNRKQRNAQSSSSTETSQRSR 53
>SB_22366| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 389
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/64 (26%), Positives = 31/64 (48%)
Frame = +1
Query: 43 LNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLV 222
LN + + K + + ++ RG+ D + RI+ +A+DQ V+S +KD V
Sbjct: 290 LNRPQAARKASDLSTSSDHIDRGAMTFDMLQSRIEGVESALDQIYGKVKSELRD-IKDTV 348
Query: 223 GGLA 234
+A
Sbjct: 349 STMA 352
>SB_17496| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 346
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = +2
Query: 476 YARRKTKLLYWLRHRGGKKESPRDN 550
YAR K KL+YW GK PRDN
Sbjct: 222 YAREKNKLIYWPVSNCGK---PRDN 243
>SB_54020| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2431
Score = 27.5 bits (58), Expect = 9.5
Identities = 17/88 (19%), Positives = 38/88 (43%)
Frame = +1
Query: 1 LKKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTE 180
LK+LGE+ +L + +E +K + N+ ND + ++ + +++ + +
Sbjct: 1107 LKQLGELHMSLQWEMTVLETLVKEENDFANNSNDAAPESSVKGLVSVVSDSKQVPGASKK 1166
Query: 181 AVESRTHALVKDLVGGLADDVVAANKNL 264
A E + ++ L + NK L
Sbjct: 1167 AEEPPLQPSQQRIIKQLLQLITNVNKCL 1194
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,089,609
Number of Sequences: 59808
Number of extensions: 304379
Number of successful extensions: 933
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 881
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 933
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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