Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060810.seq
(630 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006651-12|AAM48541.1| 231|Caenorhabditis elegans Hypothetical... 33 0.22
AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical... 33 0.22
AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical... 33 0.22
AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical... 32 0.39
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 30 1.2
Z81143-6|CAI58649.1| 283|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical pr... 29 2.7
X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic int... 29 2.7
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 29 3.6
Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical pr... 27 8.4
Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 27 8.4
X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic int... 27 8.4
>AC006651-12|AAM48541.1| 231|Caenorhabditis elegans Hypothetical
protein H06I04.1c protein.
Length = 231
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 4 KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEA 183
K L E +AL+++ +L KT I ++ + + D+IDK+ID + + ++++ +
Sbjct: 66 KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 125
Query: 184 VESRTHALVK 213
S L K
Sbjct: 126 TSSLQDDLEK 135
>AC006651-11|AAM48540.1| 428|Caenorhabditis elegans Hypothetical
protein H06I04.1b protein.
Length = 428
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 4 KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEA 183
K L E +AL+++ +L KT I ++ + + D+IDK+ID + + ++++ +
Sbjct: 263 KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 322
Query: 184 VESRTHALVK 213
S L K
Sbjct: 323 TSSLQDDLEK 332
>AC006651-10|AAF39866.2| 456|Caenorhabditis elegans Hypothetical
protein H06I04.1a protein.
Length = 456
Score = 32.7 bits (71), Expect = 0.22
Identities = 18/70 (25%), Positives = 36/70 (51%)
Frame = +1
Query: 4 KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEA 183
K L E +AL+++ +L KT I ++ + + D+IDK+ID + + ++++ +
Sbjct: 263 KSLFEKSRALSRQQIPNDLLEKTRKIDFSEAKNAKNQDLIDKLIDENENLQISLNREQKM 322
Query: 184 VESRTHALVK 213
S L K
Sbjct: 323 TSSLQDDLEK 332
>AF067608-11|AAC17656.2| 368|Caenorhabditis elegans Hypothetical
protein B0511.11 protein.
Length = 368
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = +1
Query: 4 KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEA 183
KK +EK LT NE+ + +L+ +DKIID + + A+D+ T+A
Sbjct: 171 KKHAAIEKCLTPEENEVLAKFFSGKQKLDSNVLAVLDSALDKIIDYLQKNNCAVDEETKA 230
Query: 184 VESRTHAL 207
V + L
Sbjct: 231 VMKKRDKL 238
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/52 (38%), Positives = 28/52 (53%)
Frame = +1
Query: 1 LKKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETR 156
L +L E++K LNE L+L L E+D GS++ DKI+ ID R
Sbjct: 2815 LNELAEIQKMPADSLNEHALNL------LATESDKFGSEISDKIMQEIDVLR 2860
>Z81143-6|CAI58649.1| 283|Caenorhabditis elegans Hypothetical
protein ZK265.9 protein.
Length = 283
Score = 29.9 bits (64), Expect = 1.6
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = -2
Query: 596 LVLHGRYYQXIPTTLYYLWDFLSFLLGVATNIIVWFFALRTLLILXSSASGVDR 435
L LH +++ I ++ Y F+ +LG ++ WF R L AS + R
Sbjct: 225 LFLHAFWFKQIIISVLYYHIFIEEILGAVAAVVCWFVTYRMLYPAGFLASPIRR 278
>Z81140-2|CAB03486.1| 581|Caenorhabditis elegans Hypothetical
protein W10G6.3 protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 37 KRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
K + EME++ T++++ ++ G I K+ D++DE R ++
Sbjct: 118 KVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEE 162
>X70835-1|CAA50183.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 29.1 bits (62), Expect = 2.7
Identities = 12/45 (26%), Positives = 26/45 (57%)
Frame = +1
Query: 37 KRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
K + EME++ T++++ ++ G I K+ D++DE R ++
Sbjct: 118 KVMYEMEITTATNVVKQTGKDHGETEKEIRKLQDQLDELRKKFEE 162
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 28.7 bits (61), Expect = 3.6
Identities = 25/89 (28%), Positives = 37/89 (41%)
Frame = +1
Query: 4 KKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEA 183
K+L +VE+ K NE++ I + DEN K E AA +
Sbjct: 419 KELADVEREDEKLNNEIQ-----SISRTIDENRYEMDTFAAKSTSLKQEYDAAY--VAQQ 471
Query: 184 VESRTHALVKDLVGGLADDVVAANKNLRR 270
+R ++D +G D+ AAN LRR
Sbjct: 472 TAAREEKAIRDKIGNTEQDISAANDQLRR 500
>Z81140-5|CAB03487.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 37 KRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
K + EME++ T++++ ++ I KI D++DE R ++
Sbjct: 118 KIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEE 162
>Z54282-5|CAA91057.4| 581|Caenorhabditis elegans Hypothetical
protein F52E10.5 protein.
Length = 581
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 37 KRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
K + EME++ T++++ ++ I KI D++DE R ++
Sbjct: 118 KIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEE 162
>Z29095-4|CAA82348.3| 444|Caenorhabditis elegans Hypothetical
protein R10E11.5 protein.
Length = 444
Score = 27.5 bits (58), Expect = 8.4
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = +1
Query: 145 DETRAAMDQTTEAVESRTHALVKDLVGGLADDVVAANKNLRRSQK 279
+E +DQT + ++S + + KD+ +A+ V K L +S K
Sbjct: 311 EEVVQTIDQTVKNIKSNVNEVKKDVEKNIAEKVDDITKELEKSAK 355
>X70831-1|CAA50179.1| 581|Caenorhabditis elegans Cytoplasmic
intermediate filament(IF) protein protein.
Length = 581
Score = 27.5 bits (58), Expect = 8.4
Identities = 12/45 (26%), Positives = 25/45 (55%)
Frame = +1
Query: 37 KRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQ 171
K + EME++ T++++ ++ I KI D++DE R ++
Sbjct: 118 KIMYEMEITTATNVVKETGKDHEEAEKEIGKIKDQLDELRKKFEE 162
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,448,770
Number of Sequences: 27780
Number of extensions: 225348
Number of successful extensions: 716
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 676
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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