Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060810.seq
(630 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g02880.1 68415.m00238 mucin-related similar to putative mucin... 29 1.9
At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family pr... 28 4.4
At5g40470.1 68418.m04908 expressed protein 28 4.4
At3g42670.1 68416.m04437 SNF2 domain-containing protein / helica... 28 4.4
At1g10385.1 68414.m01170 hypothetical protein 28 4.4
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 28 5.9
At4g00920.1 68417.m00125 COP1-interacting protein-related simila... 28 5.9
At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearl... 28 5.9
At4g13280.1 68417.m02077 terpene synthase/cyclase family protein... 27 7.8
>At2g02880.1 68415.m00238 mucin-related similar to putative mucin
GI:18071389 [Oryza sativa]
Length = 314
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/73 (24%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = +1
Query: 67 KTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVGGLADDVV 246
K + +L+D G G+D ID+++D E ++D + +E + + +K+ G
Sbjct: 160 KLEEAKLDDSGSGGGADDIDRLLDSCSEIFDSVDHDFDKLEVSSGSELKNKPDGWESTAK 219
Query: 247 AANKNL-RRSQKD 282
+ NL SQ++
Sbjct: 220 EQDGNLWEMSQRE 232
>At5g65200.1 68418.m08200 armadillo/beta-catenin repeat family
protein / U-box domain-containing protein contains Pfam
domain, PF00514: Armadillo/beta-catenin-like repeats and
Pfam, PF04564: U-box domain
Length = 556
Score = 28.3 bits (60), Expect = 4.4
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Frame = +1
Query: 10 LGEVEKALTKRLNEME---LSLKTDIIQLNDENDGRGSDMIDKIID 138
L EVE+ T+R E L L + + +DE DG GS D++ID
Sbjct: 486 LKEVEERGTERAREKAKKILQLMRERVPEDDEEDGEGSIDWDRVID 531
>At5g40470.1 68418.m04908 expressed protein
Length = 496
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/53 (28%), Positives = 25/53 (47%)
Frame = -2
Query: 494 WFFALRTLLILXSSASGVDRPLHPGEHLVSSLLTTFESDCHRMKCRTVDGFGC 336
W F + +L S V+ L +HL ++L +C +K +T+D GC
Sbjct: 395 WLFDKEVVSMLASCNGLVEVVLRDCKHLTGAVLVALNKNC--VKLKTLDILGC 445
>At3g42670.1 68416.m04437 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to SP|P41410
DNA repair protein rhp54 (RAD54 homolog)
{Schizosaccharomyces pombe}; contains PFam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1256
Score = 28.3 bits (60), Expect = 4.4
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +1
Query: 49 EMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVE 189
E +S + I + + G + +ID + RID T AA D+ T VE
Sbjct: 467 ETGVSEEPQIYKKRTLSAGAYNKLIDSYMSRIDSTIAAKDKATNVVE 513
>At1g10385.1 68414.m01170 hypothetical protein
Length = 754
Score = 28.3 bits (60), Expect = 4.4
Identities = 21/74 (28%), Positives = 30/74 (40%)
Frame = +1
Query: 1 LKKLGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTE 180
LKKLG+ +A T L E L+ +I L N G + + T A ++
Sbjct: 235 LKKLGDGSRAHTLLLRSYERRLQANIQSLRASNTSYGVAFAAALSQLVFSTIAQAASDSQ 294
Query: 181 AVESRTHALVKDLV 222
AV A +LV
Sbjct: 295 AVVGEDPAYTSELV 308
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +1
Query: 10 LGEVEKALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDETRAAMDQTTEAVE 189
+ E+E+ L K NE ++ KT+ ++ D N S+ + + +IDE TE+ E
Sbjct: 267 VAELEEKLIK--NEDDIEEKTEEMKEQDNNQANKSEEEEDVKKKIDENETPEKVDTESKE 324
>At4g00920.1 68417.m00125 COP1-interacting protein-related similar
to COP1-interacting protein 4 (CIP4) [Arabidopsis
thaliana] GI:13160646
Length = 314
Score = 27.9 bits (59), Expect = 5.9
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 13 GEVEK-ALTKRLNEMELSLKTDIIQLNDENDGRGSDMIDKIIDRIDET 153
G VE A+ K L + E S+ TDI ++DEN+ D + ++++ I+++
Sbjct: 156 GVVEPFAIGKDLEKGEKSVATDIALVDDENESHKDDDV-RVVEDINQS 202
>At1g70320.1 68414.m08090 ubiquitin-protein ligase 2 (UPL2) nearly
identical to ubiquitin-protein ligase 2 [Arabidopsis
thaliana] GI:7108523; E3, HECT-domain protein family;
similar to ubiquitin-protein ligase 2 GI:7108523 from
[Arabidopsis thaliana]
Length = 3658
Score = 27.9 bits (59), Expect = 5.9
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
Frame = +1
Query: 91 DENDGRGSDMIDKIIDRIDETRAAMDQTTEAVESRTHALVKDLVG---GLADDVVA 249
D+ D DM+D+ D ETR + EA++ H + G G DD+ A
Sbjct: 2194 DDEDEYNDDMVDEDEDDFHETRVIEVRWREALDGLDHFQIVGRSGGGNGFIDDITA 2249
>At4g13280.1 68417.m02077 terpene synthase/cyclase family protein
predicted protein, Arabidopsis thaliana
Length = 535
Score = 27.5 bits (58), Expect = 7.8
Identities = 12/28 (42%), Positives = 18/28 (64%)
Frame = -1
Query: 237 IGKTTDQILDESVRSTLDRLGRLIHGSS 154
+G TTD ILDE+++ T L L+ G +
Sbjct: 159 LGTTTDYILDEALKFTSSHLKSLLAGGT 186
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,018,627
Number of Sequences: 28952
Number of extensions: 218424
Number of successful extensions: 727
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 713
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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