Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060809.seq
(602 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 31 0.13
SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 31 0.17
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 31 0.17
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 31 0.17
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr... 29 0.69
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 28 0.91
SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces pomb... 28 1.2
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 2.1
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 27 2.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 27 2.1
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 27 2.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 2.1
SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces pom... 27 2.1
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 27 2.1
SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 27 2.8
SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans isomera... 27 2.8
SPAC26A3.09c |rga2||GTPase activating protein Rga2|Schizosacchar... 27 2.8
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch... 27 2.8
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 26 3.7
SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 26 4.9
SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces pom... 26 4.9
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c... 26 4.9
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 26 4.9
SPBC1289.02c |uap2||U2 snRNP-associated protein Uap2|Schizosacch... 25 6.4
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc... 25 6.4
SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subun... 25 6.4
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.4
SPBC3B9.06c |apg3||autophagy associated protein Apg3 |Schizosacc... 25 6.4
SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|c... 25 6.4
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 6.4
SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces pom... 25 6.4
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe... 25 6.4
SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 25 8.5
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 25 8.5
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p... 25 8.5
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 25 8.5
SPAC29A4.11 |rga3||GTPase activating protein Rga3|Schizosaccharo... 25 8.5
SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces... 25 8.5
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 25 8.5
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 31.1 bits (67), Expect = 0.13
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 5/55 (9%)
Frame = +2
Query: 302 IELTQESLATATSKHLKSDLQSNE-----QNNLDEEYARFMAEMNDSNAYNDDSK 451
I+LT+ SL A+ L + + NE L +EY + + + D+NA ND+ +
Sbjct: 248 IDLTESSLRKASKSILSLEQKVNEVKQSDSKKLQDEYQKLVRGLQDANAANDEDQ 302
>SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 451
Score = 30.7 bits (66), Expect = 0.17
Identities = 17/68 (25%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Frame = +2
Query: 317 ESLATATSKHLKSDLQSNEQNNLDEEY-ARFMAEMNDSNAYNDDSKNKN---DSEENNGN 484
+S ++++S +S + N+ ++ + + +E +DS++ + DS++++ DS+ ++ +
Sbjct: 217 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSDSSSNS 276
Query: 485 SDIEDDLS 508
SD EDD S
Sbjct: 277 SDSEDDSS 284
Score = 26.6 bits (56), Expect = 2.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 311 TQESLATATSKHLKSDLQSNEQNN-LDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNS 487
++ S + S SD +S + D + +E S+ ND S + +DSE + +
Sbjct: 137 SESSSEDSDSSSSSSDSESESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSE 196
Query: 488 DIEDDLS 508
D + S
Sbjct: 197 DSDSSSS 203
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 365 SNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSVY 514
SN +N+ A F + +D++ ND+ ++ N++ NN + +DD Y
Sbjct: 510 SNSSSNISN-VANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAY 558
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 350 KSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNK------NDSEENNGNSDIEDD 502
K D Q+ ++ +D +++FM + D +NK + + +NN N+ +EDD
Sbjct: 307 KEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDD 363
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 30.7 bits (66), Expect = 0.17
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 365 SNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLSVY 514
SN +N+ A F + +D++ ND+ ++ N++ NN + +DD Y
Sbjct: 510 SNSSSNISN-VANFDSAEDDNDNDNDNDRDSNNNNNNNNTNTDDDDKLAY 558
Score = 27.5 bits (58), Expect = 1.6
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 6/57 (10%)
Frame = +2
Query: 350 KSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNK------NDSEENNGNSDIEDD 502
K D Q+ ++ +D +++FM + D +NK + + +NN N+ +EDD
Sbjct: 307 KEDAQNIKERMVDFCFSKFMEKNQQRREQQDKGENKKRQDDVDQATDNNTNTILEDD 363
>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 455
Score = 28.7 bits (61), Expect = 0.69
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 329 TATSKHLKSDLQSNEQNNLDEE-YARFMAEMNDSNAYNDDSKNKNDSEENN 478
TATS H + +N+Q DEE Y A N S + N S K+ N
Sbjct: 91 TATSSHPSFYIANNKQKGYDEEMYKVNPASRNKSQSNNISSHEKSSKTTKN 141
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 28.3 bits (60), Expect = 0.91
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +2
Query: 317 ESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIE 496
E LA +SDL +E L+ + + S N DS+ +N + N DI
Sbjct: 3934 EELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVN-DIP 3992
Query: 497 DDLS 508
+DLS
Sbjct: 3993 EDLS 3996
>SPCC1919.05 |||TPR repeat protein Ski3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1389
Score = 27.9 bits (59), Expect = 1.2
Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Frame = +2
Query: 254 QEKESLLTLQS-DLNQLIELTQES-LATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDS 427
Q+ + QS +L + IEL S LA A SDL E + + E + AE+
Sbjct: 277 QDHSDISFFQSAELQEYIELFPGSPLAQALFAFRNSDLWHKE-HPIQLEDSNNSAELAKE 335
Query: 428 NAYNDDSKNKNDSEEN 475
DDS+N D +EN
Sbjct: 336 TKEEDDSENSVDKKEN 351
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 2.1
Identities = 17/68 (25%), Positives = 30/68 (44%)
Frame = +2
Query: 302 IELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNG 481
+E + +A S + D ++ D+ FM + D+++ NDDS S +
Sbjct: 1869 MEFEDDQSGSADSVVSEDDADDVMYSDNDDMNIEFMVDEQDASSQNDDSSFDEASSHGDV 1928
Query: 482 NSDIEDDL 505
S E+DL
Sbjct: 1929 ISIDEEDL 1936
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 7/53 (13%)
Frame = +2
Query: 365 SNEQNNLDEEYARFMAEMND-----SNAY--NDDSKNKNDSEENNGNSDIEDD 502
S+E ++ D+E +++ N+ SN + D ++ +DSEE +GN +DD
Sbjct: 768 SDEDDDDDDEVVEWVSRGNENKYPRSNFFINGSDREDFSDSEEEDGNDSSDDD 820
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/55 (18%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Frame = +2
Query: 314 QESLATATSKHLKSDLQSNEQNNLDEEYARFMAE-MNDSNAYNDDSKNKNDSEEN 475
++ L+ S+ L + ++ + + +A++M++ ++D+NA S +++D +++
Sbjct: 722 EDPLSREMSRRLSFESANDSDQDNRDHFAQYMSQQISDNNANQFSSSDEDDDDDD 776
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 27.1 bits (57), Expect = 2.1
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +2
Query: 257 EKESLLTLQSDLNQLIELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAY 436
E ES T + + + LI ++ T + K+ +S + LDE+Y ++ SNA
Sbjct: 133 EDEST-TFKDEEDDLISPKSYLTSSKTFSYPKAPTESTNGDYLDEDYVDGQSDPESSNAS 191
Query: 437 NDDSKNKND 463
+ D + D
Sbjct: 192 DSDFADSPD 200
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +2
Query: 344 HLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLS 508
H +SD+ S QN+ +++ A++ SN N+ KN+ E N +SD ++ ++
Sbjct: 67 HSRSDVSSQVQNSPNKDEEHQTADLLASNEGNE----KNNEENNVVSSDSKEAIT 117
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 2.1
Identities = 23/85 (27%), Positives = 41/85 (48%)
Frame = +2
Query: 257 EKESLLTLQSDLNQLIELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAY 436
E+E +T L+ +++ QESL H D + NE+ ++ A ++
Sbjct: 322 EEEDQITHYISLDDNLDV-QESLGIF---HYDPDYEENEK--------KYDAIKHEILGE 369
Query: 437 NDDSKNKNDSEENNGNSDIEDDLSV 511
DD +N+ D E++ S+ E+D SV
Sbjct: 370 EDDDENEEDEEDSEETSESEEDESV 394
>SPAC22E12.18 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 336
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 389 EEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDD 502
EE+ F++ + D+ + +D K +DS ++ S+ EDD
Sbjct: 177 EEWDNFVSMLEDARSDLEDYKEGDDSNWDDFGSESEDD 214
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 27.1 bits (57), Expect = 2.1
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 356 DLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSD 490
DL+ + + +E N+S+ D +++ SEE+NGN +
Sbjct: 152 DLEKQRLHFANSNLHSIESERNESSLSLDSGESEKKSEEDNGNGE 196
>SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor
eIF3c|Schizosaccharomyces pombe|chr 1|||Manual
Length = 918
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/85 (20%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
Frame = +2
Query: 257 EKESLLTLQSDLNQLIELTQESLATATSKHL---KSDLQSNEQNNLDEEYARFMAEMNDS 427
E+ES + +S+ ++ ++ES K D +S+ +++ +EE + S
Sbjct: 44 EEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSEEEEETESEEDSEVS 103
Query: 428 NAYNDDSKNKNDSEENNGNSDIEDD 502
+ +S+++++SEE + + + D+
Sbjct: 104 DESESESESESESEEESESEEESDE 128
Score = 25.8 bits (54), Expect = 4.9
Identities = 19/84 (22%), Positives = 42/84 (50%)
Frame = +2
Query: 260 KESLLTLQSDLNQLIELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYN 439
+E+ LT S L + + + E ++ S+ +S+E+ + EE + + A +
Sbjct: 21 EENRLT-SSRLKKQDDSSSEEESSEEESASSSESESSEEESESEE-SEVEVPKKKAVAAS 78
Query: 440 DDSKNKNDSEENNGNSDIEDDLSV 511
+DS++ ++S E ++ E+D V
Sbjct: 79 EDSESDSESSEEEEETESEEDSEV 102
>SPBC1347.02 |fkbp39||FKBP-type peptidyl-prolyl cis-trans
isomerase|Schizosaccharomyces pombe|chr 2|||Manual
Length = 361
Score = 26.6 bits (56), Expect = 2.8
Identities = 12/50 (24%), Positives = 25/50 (50%)
Frame = +2
Query: 356 DLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDL 505
D + E+ DE+Y E + + D +++ +SE + ++ ED+L
Sbjct: 124 DEEDEEEEESDEDYDLSPTEEDLVETVSGDEESEEESESEDNSASEEDEL 173
>SPAC26A3.09c |rga2||GTPase activating protein
Rga2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1275
Score = 26.6 bits (56), Expect = 2.8
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Frame = +2
Query: 320 SLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGN----- 484
S++T +++ + S ++S+ + L + F + +N DS D ++NN N
Sbjct: 255 SVSTESAERIDS-IRSDNLSPLSLNTSSFRRPITKPTPFNSDSNISIDPKDNNSNKQDHF 313
Query: 485 SDIEDDL 505
++IED+L
Sbjct: 314 AEIEDEL 320
>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 764
Score = 26.6 bits (56), Expect = 2.8
Identities = 9/30 (30%), Positives = 16/30 (53%)
Frame = +2
Query: 413 EMNDSNAYNDDSKNKNDSEENNGNSDIEDD 502
E ND ++ +DD N D + S++ D+
Sbjct: 351 EANDESSEDDDEDNNTDEANEDAQSNVSDE 380
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/53 (24%), Positives = 27/53 (50%)
Frame = +2
Query: 329 TATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNS 487
T+T + +S +E NN DE + ++D + + S + ++ ++GNS
Sbjct: 348 TSTEANDESSEDDDEDNNTDEANEDAQSNVSDESPKGEGSSHSDNVVLSDGNS 400
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/20 (45%), Positives = 18/20 (90%)
Frame = +3
Query: 168 KMEDLESSLNQYKEQIKIVQ 227
K+++L S++N+Y+EQ+ +VQ
Sbjct: 1622 KIKELTSTVNKYREQLAMVQ 1641
>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 599
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/59 (25%), Positives = 24/59 (40%)
Frame = +2
Query: 311 TQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNS 487
T ES S+ + + S+ N D + + + ND+ K+D E NG S
Sbjct: 356 TTESENDTLSESSTTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESENGKS 414
>SPCC2H8.05c ||SPCC63.01c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +2
Query: 368 NEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLS 508
+ + +L+ E D+ ND + +S ENNG ++ +DD S
Sbjct: 122 DRKKSLERRVREEQEEKTDNEDDNDVEISTQESLENNGLAEKKDDTS 168
>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.9
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Frame = +2
Query: 257 EKESLLTLQSDLNQLIELTQESLATATSKHLKSDLQSNEQNNLDEEYARF---MAEMNDS 427
E E + + D N+ I +E SK ++ + +DE A ++E+N +
Sbjct: 307 ENEKIESDDLDKNEEISEGEEYTPIEESKE-PITVRRDSVIQIDESSAGLTDVISELNFT 365
Query: 428 NAYNDDSKNKNDSEENN 478
N +NDDSKN N + N+
Sbjct: 366 N-HNDDSKNSNITTSND 381
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 25.8 bits (54), Expect = 4.9
Identities = 16/66 (24%), Positives = 34/66 (51%)
Frame = +2
Query: 314 QESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDI 493
+E +A + +++D + ++ EE R + E D +A +++ S + N D+
Sbjct: 391 REEVAAVEAAKIRADEEKKKKER--EEQVRLLQESADKDAEMNEA-----STATSENEDL 443
Query: 494 EDDLSV 511
+DDLS+
Sbjct: 444 KDDLSL 449
>SPBC1289.02c |uap2||U2 snRNP-associated protein
Uap2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/39 (23%), Positives = 19/39 (48%)
Frame = +2
Query: 362 QSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENN 478
+ E +N ++ + + + E + Y S+NK EN+
Sbjct: 62 EGKESSNGEDRHTKRLYESTSAEGYPSGSRNKKSKSENS 100
>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 615
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = -2
Query: 151 DFHYLCGYNIYNRVNLIYVFSF*CINKI 68
DF Y+CG + + +IY F I+K+
Sbjct: 34 DFDYMCGRTVPSVAAIIYTFGSQSISKL 61
>SPBC839.12 |rpc31||DNA-directed RNA polymerase III complex subunit
Rpc31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 210
Score = 25.4 bits (53), Expect = 6.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Frame = +2
Query: 329 TATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDD 502
T ++ LK + N++EE + E D + +DD + ++ +NG D DD
Sbjct: 144 TIKAQDLKDESSEAAHPNIEEEPDEGLEE-EDEDFGDDDDNDYGENYFDNGEGDDYDD 200
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/80 (21%), Positives = 30/80 (37%), Gaps = 4/80 (5%)
Frame = +2
Query: 275 TLQSDLNQLIELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDS-- 448
T SD + T S H+ D ++++ + + S +Y D
Sbjct: 191 TTYSDSSNYHTSTDSSQYNDQDDHVYDDTNDGTDDDINNNEYKDDESSSGSESYERDEDV 250
Query: 449 --KNKNDSEENNGNSDIEDD 502
+ + D +ENN D ED+
Sbjct: 251 DEEEEEDDDENNDEGDDEDE 270
>SPBC3B9.06c |apg3||autophagy associated protein Apg3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 275
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 440 DDSKNKNDSEENNGNSDIEDDLS 508
DD++NK+D ++++ S I D S
Sbjct: 95 DDTRNKDDDQDDDAISSIHSDTS 117
>SPAC15E1.04 |||thymidylate synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 625
Score = 25.4 bits (53), Expect = 6.4
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Frame = +2
Query: 302 IELTQESLATATSKHLKS-DLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENN 478
++L Q+S+ K++ D S+EQ EEY +D + DD++ N E +
Sbjct: 213 LQLEQKSVLPNAVKNIDGQDDDSSEQTAAFEEYD------DDDDDDVDDNEQSNSMIETS 266
Query: 479 GNSDIEDDLSV 511
N+DI S+
Sbjct: 267 ANADITPKASL 277
>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 25.4 bits (53), Expect = 6.4
Identities = 17/76 (22%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Frame = +2
Query: 257 EKESLLTLQSDLNQLIELTQESLATATSKHLKSDLQSN--EQNNLDEEYARFMAEMNDSN 430
E E + + SD+ + ++ + A +S+++K+D N +Q N +E+ AE + +
Sbjct: 334 EAEQSIDVSSDIGLRSDSSKPNEAPTSSENIKADQPENSTKQENPEEDMQIKDAEEHSNL 393
Query: 431 AYNDDSKNKNDSEENN 478
++ ++ E NN
Sbjct: 394 ESTPAAQQTSEVEANN 409
>SPBP23A10.02 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 132
Score = 25.4 bits (53), Expect = 6.4
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +2
Query: 410 AEMNDSNAYNDDSKNKNDSEENNGNSDIEDDLS 508
A +N+ + S NKND NN N ++S
Sbjct: 71 ARVNNDLQMSSQSANKNDDNSNNQNPSNNKEMS 103
>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 716
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +3
Query: 498 MTSLFIGYEVCGLSYXQWGGQPSLHM 575
M SLF+GY + + WG S +M
Sbjct: 120 MRSLFVGYSLTSADFSIWGALKSNNM 145
>SPAC56F8.15 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 176
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 1/28 (3%)
Frame = -1
Query: 494 LCHCCHYFLLNHF-CFCYHHCMHLSHSF 414
LC + LL H C Y H +H H F
Sbjct: 39 LCFLSFFALLLHLPCSIYSHTLHFFHHF 66
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +3
Query: 147 KSNRYRQKMEDLESSLNQYKEQIKIVQQSL 236
K + QK+EDL S+ + E++ I+ Q L
Sbjct: 568 KQTKLTQKLEDLIESVQKSGEKLMIMHQKL 597
>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1272
Score = 25.0 bits (52), Expect = 8.5
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -1
Query: 494 LCHCCHYFLLNHFCFCYHHCMHLSHSF 414
+ HC F +NH CF + +L F
Sbjct: 939 ISHCGDLFAINHVCFVRNSLKYLLDDF 965
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 25.0 bits (52), Expect = 8.5
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 356 DLQSNEQNNLDEEYARFMAEMNDSNAYNDD 445
+L+ NN EE+ +A+MN + +ND+
Sbjct: 446 NLEQTSVNNDSEEFETLLAKMNMTPDFNDN 475
>SPAC29A4.11 |rga3||GTPase activating protein
Rga3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 969
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +3
Query: 171 MEDLESSLNQYKEQIKIVQQSLEATHDLKRKNL 269
+E L+ Y KI+ +SLEA+ L KNL
Sbjct: 550 LERRNELLDDYNNVQKILNESLEASVHLNTKNL 582
>SPAC29A4.09 |||rRNA processing protein Rrp17|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 25.0 bits (52), Expect = 8.5
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Frame = +2
Query: 347 LKSDLQSNEQNNLDEEYARFMAEMNDS------NAYNDDSKNKNDSEENN 478
L+ L+ + L E A F E+N S ++ +DS +K+DSEE +
Sbjct: 67 LRKSLREQRKRELAERLA-FSKELNSSLENDEESSQQEDSSSKSDSEEES 115
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/78 (16%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Frame = +2
Query: 275 TLQSDLNQL-IELTQESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSK 451
++ D N ++ ++ A+ ++ ++ N D E A+ S+ + ++
Sbjct: 8 SIDKDANSTEVDAAEQDAASVKINSTRASPNGSDLLNDDSEAAKITTNEKQSSPVDSHNE 67
Query: 452 NKNDSEENNGNSDIEDDL 505
+ ND+ N G E+++
Sbjct: 68 SPNDTTINKGEDGNENEV 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,119,664
Number of Sequences: 5004
Number of extensions: 40328
Number of successful extensions: 278
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 263
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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