Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060809.seq
         (602 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.19 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    26   0.33 
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    25   0.76 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.00 
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.00 
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    23   1.7  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              22   4.0  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    22   4.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.3  
AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    21   9.3  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = +2

Query: 422 DSNAYNDDSKNKNDSEENNGNSD 490
           ++NA N+++ N N++  NNG +D
Sbjct: 234 NTNASNNNNNNNNNNNNNNGAND 256



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 14/55 (25%), Positives = 30/55 (54%)
 Frame = +2

Query: 326 ATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSD 490
           ATA +  L++  +++  + +    A   A  N++N  N+++ N N+   +NGN +
Sbjct: 209 ATAGAVVLETCQRNSNNSTITAGNANTNASNNNNN--NNNNNNNNNGANDNGNGN 261



 Score = 24.6 bits (51), Expect = 0.76
 Identities = 15/56 (26%), Positives = 27/56 (48%)
 Frame = +2

Query: 326 ATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDI 493
           +T T+ +  ++  +N  NN +          N++N  ND+  N N +  NN N D+
Sbjct: 226 STITAGNANTNASNNNNNNNNNN--------NNNNGANDNG-NGNGASNNNNNGDM 272



 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +2

Query: 428 NAYNDDSKNKNDSEENNGNSDIEDD 502
           NA  + S N N++  NN N++  +D
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGAND 256



 Score = 21.4 bits (43), Expect = 7.0
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +2

Query: 437 NDDSKNKNDSEENNGNSDIEDD 502
           N  + N N++  NN N+   D+
Sbjct: 236 NASNNNNNNNNNNNNNNGANDN 257


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 368 NEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENN 478
           N+QN+  +   R      + N  ND+  N+ND+  N+
Sbjct: 498 NKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRND 534



 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +2

Query: 368 NEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDD 502
           N+QN   +   +      + N  ND+ +N N   +N  N + ++D
Sbjct: 478 NKQNGNRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQND 522



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +2

Query: 365 SNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEEN--NGN 484
           +N+QN   +   R      + N  ND+ +N N   +N  NGN
Sbjct: 452 ANKQNGNRQNDNRQNDNKQNGNRQNDNKQNGNRQNDNKQNGN 493



 Score = 23.4 bits (48), Expect = 1.7
 Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = +2

Query: 368 NEQNNLDEEYARFMAEMNDSNAYNDDSKNKN--DSEENNGNSDIEDDLSVY 514
           N+QN   +   +      + N  ND+ +N N  +  +NN N +  +D  V+
Sbjct: 488 NKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQNNQNDNNRNDNQVH 538



 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +2

Query: 368 NEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSD 490
           N QN+  +   R      + N  ND+ +N N    N  N +
Sbjct: 463 NRQNDNKQNGNRQNDNKQNGNRQNDNKQNGNRQNGNKQNDN 503



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +2

Query: 368 NEQN-NLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGN 484
           N+QN N   +  R     ND N  N +  N+ND++ ++ +
Sbjct: 503 NKQNGNRQNDNKRNGNRQND-NQNNQNDNNRNDNQVHHSS 541


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 356 DLQSNEQNNLDEEYARFMAEMND--SNAYNDDSKNKNDSEENNGNSD 490
           D Q N   N +   AR  ++ ++  +N +ND + + + S   + N+D
Sbjct: 418 DNQDNNHYNHNHNQARHSSKSDNQNNNQHNDQAHHSSKSNNRHNNND 464


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 15/59 (25%), Positives = 28/59 (47%)
 Frame = +2

Query: 317 ESLATATSKHLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDI 493
           ES   A   +    L + +  NL E   R + ++  +   +DD  + ND +E++  +DI
Sbjct: 156 ESNVQALPVNSLCSLDNLQTLNLTENRLRDINDIGLNRRDSDDGSDGNDGDESSCRADI 214


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 12/53 (22%), Positives = 25/53 (47%)
 Frame = +2

Query: 344 HLKSDLQSNEQNNLDEEYARFMAEMNDSNAYNDDSKNKNDSEENNGNSDIEDD 502
           H+K + QS E   L     R + +       +DD  ++ +  E++G+   +D+
Sbjct: 662 HIKQEGQSPEGGKLTRLIKRELVDAPADQEGDDDQVDEREYPESHGHDSGQDE 714


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/23 (34%), Positives = 16/23 (69%)
 Frame = +2

Query: 416 MNDSNAYNDDSKNKNDSEENNGN 484
           ++++N YN+++ N N +  NN N
Sbjct: 323 IHNNNNYNNNNYNNNYNNYNNNN 345


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -1

Query: 491 CHCCHYFLLNHFCFCYHHC 435
           C+CC    L       HHC
Sbjct: 91  CYCCRESYLKERHITLHHC 109


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 7/19 (36%), Positives = 8/19 (42%)
 Frame = -1

Query: 491 CHCCHYFLLNHFCFCYHHC 435
           C+CC    L       HHC
Sbjct: 91  CYCCRESYLKERHITLHHC 109


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = +2

Query: 428 NAYNDDSKNKNDSEENNGNSDI 493
           N YND+      +  N+ NSD+
Sbjct: 136 NNYNDNYFYSKSNGSNSSNSDV 157


>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +2

Query: 425 SNAYNDDSKNKNDSEENN 478
           +N  ND+ +N N+  +NN
Sbjct: 416 NNNQNDNIQNTNNQNDNN 433


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,728
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 25
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)