Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060808.seq
(635 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 32 0.080
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22... 29 0.74
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 27 2.3
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 27 3.0
SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1 |Schizosa... 26 4.0
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi... 25 6.9
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 25 6.9
SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi... 25 6.9
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ... 25 9.1
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 31.9 bits (69), Expect = 0.080
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Frame = +3
Query: 345 RAFVGLDTLEILTLYENRISVVDGEAFKGLEK-KLKRLNLGGNELTAVPQKALALLRI 515
+ L LE+L + N I +D F GL + LK LN+ N+L +P L+ +
Sbjct: 470 KPITALRQLEVLNMSRNDIYELDPLIFSGLSRNSLKELNIANNKLFFLPHSTRYLVNL 527
Score = 31.9 bits (69), Expect = 0.080
Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Frame = +3
Query: 327 VTAVHNRAFVGLDTLEILTLYENRISVVDGEAFKGLE--KKLKRLNLGGNELTAVPQK 494
V+++ ++ FV + T+E L L +NR+ + F LE K LK LNL N LT +P K
Sbjct: 795 VSSLSSQEFV-MPTVEELYLVDNRLG---NDCFTALEYFKCLKVLNLSYNYLTEIPSK 848
>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 28.7 bits (61), Expect = 0.74
Identities = 16/40 (40%), Positives = 24/40 (60%)
Frame = +2
Query: 509 ENLKKLEMQENRITSISEGDFAGLRNLDSLGLAHNQLRKF 628
ENL+ L++ N I +S AGL+NL L ++N+L F
Sbjct: 237 ENLEILDVSNNMIKHLSY--LAGLKNLVELWASNNELSSF 274
Score = 25.8 bits (54), Expect = 5.2
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +2
Query: 524 LEMQENRITSISEGDFAGLRNLDSLGLAHNQLRK 625
+E+ ++RI S++ +NL SL L NQ++K
Sbjct: 43 VELIQSRIQSMASLGLERFKNLQSLCLRQNQIKK 76
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 27.1 bits (57), Expect = 2.3
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -1
Query: 143 LDYTLRVKNKYWLAMLFLNKAKPSYWYWKSQEYGNTIKRSRKLR 12
L Y V + WL + P Y YW ++ Y +K+ R L+
Sbjct: 157 LQYITGVSDTKWLEFVSAKGQCPKYLYWNNKSY--LLKKKRFLK 198
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 26.6 bits (56), Expect = 3.0
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = -2
Query: 535 LHFKFFQILRRASAFCGTAVNSLPPRFNRLSFFSNPLKASPSTTEILFS 389
LH ++ IL ++SLP +R F S + ASP T ++ S
Sbjct: 219 LHVVYYDILPIMPLGSAKQLSSLPELLHRADFVSLHVPASPETKNMISS 267
>SPAC17A5.02c |dbr1||RNA lariat debranching enzyme Dbr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 466
Score = 26.2 bits (55), Expect = 4.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 520 FQILRRASAFCGTAVNSLPPRFNRLSFFSN 431
FQ LR S + G S+PP+F RL F N
Sbjct: 49 FQALRNVSDYHGI---SMPPKFKRLGDFFN 75
>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1107
Score = 25.4 bits (53), Expect = 6.9
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 483 VPQKALALLRI*KNL-KCKKIGLLLFQKGTLQGY 581
VP A LL++ KN+ KC I ++L+Q ++GY
Sbjct: 68 VPNLASYLLKV-KNIGKCNSITVILYQFCKIRGY 100
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/62 (32%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = -2
Query: 517 QILRRASAFCGTAVNSLPP-RFNRLSFFSNPLKASPSTTEILFSYRVSISRVSSPTNALL 341
+I RR S FC NS PP + S + +T IL + S +S+P L
Sbjct: 481 EIDRRRSGFCLNNFNSTPPFQPYHYEIGSGLPQQMHATNTILTNPIDPNSNISTPVGMHL 540
Query: 340 CT 335
CT
Sbjct: 541 CT 542
>SPCC576.13 |swc5||chromatin remodeling complex subunit
Swc5|Schizosaccharomyces pombe|chr 3|||Manual
Length = 215
Score = 25.4 bits (53), Expect = 6.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 202 KRIIKCNKLTQLDVSQNSWPQY 267
++++K NKL L+ +Q +W +Y
Sbjct: 151 QKVLKKNKLNTLEQAQQNWSKY 172
>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 846
Score = 25.0 bits (52), Expect = 9.1
Identities = 10/29 (34%), Positives = 19/29 (65%)
Frame = -2
Query: 460 RFNRLSFFSNPLKASPSTTEILFSYRVSI 374
+++ ++ S+PL ASP T + S R+S+
Sbjct: 783 KYDAMTGTSDPLSASPRTNDATISSRLSL 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,607,598
Number of Sequences: 5004
Number of extensions: 51745
Number of successful extensions: 161
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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