Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060806.seq
         (508 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe...    25   8.6  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   8.6  
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    25   8.6  

>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 285

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +3

Query: 6   REEIGLEKKTYDEVEYLEEDVTNNSQPEKDPITVC 110
           R++ G EKK   E E+L +DV   ++ +  P   C
Sbjct: 192 RQKKGTEKKRPFEPEFLNDDVIRGNKRKALPAYEC 226


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/62 (25%), Positives = 25/62 (40%)
 Frame = +3

Query: 39  DEVEYLEEDVTNNSQPEKDPITVCLTRPKXLPRAKPIKKYLQYTXXDLRXGVEAVRNNRM 218
           +E++ LEE V       K P+ +  T P  +    P  K +Q      R  + A R +  
Sbjct: 787 EEMKPLEEKVPIYRSSSKQPLRIHPTHPLRVTVCLPGSKTIQVARRSFRNSMNANRYDPQ 846

Query: 219 SR 224
            R
Sbjct: 847 RR 848


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 24.6 bits (51), Expect = 8.6
 Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +3

Query: 15  IGLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRPKXLPR-AKPIK 152
           +GL+ K   ++  L +D+T N+ P +       +RP+ LPR A P+K
Sbjct: 515 VGLDPKKLPKILELSKDITVNAHPNQP------SRPR-LPRVASPLK 554


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,537,038
Number of Sequences: 5004
Number of extensions: 23187
Number of successful extensions: 45
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)