Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060806.seq
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0058 - 493758-494114                                             29   2.8  
04_04_1571 + 34504087-34504421,34505002-34505731,34506091-345120...    29   2.8  
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461...    28   5.0  
03_06_0631 + 35193737-35193906,35194010-35194076,35194237-351944...    27   6.5  
08_02_0922 + 22646822-22647742                                         27   8.7  
04_04_1700 - 35465563-35465625,35465748-35465875,35466018-354660...    27   8.7  

>12_01_0058 - 493758-494114
          Length = 118

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 16/41 (39%), Positives = 17/41 (41%)
 Frame = -2

Query: 237 RPLLI*TSCCF*LPPRHXSGPXRCIEGIS*WVWPGAVSWAG 115
           RP  I  SCCF  P    SG     +G   WV P    W G
Sbjct: 68  RPEAIAYSCCFTSPLELYSGKKSKEKGGDLWVPPACYKWEG 108


>04_04_1571 + 34504087-34504421,34505002-34505731,34506091-34512077,
            34512493-34513964,34514114-34514377,34514761-34514978,
            34515759-34516030,34516190-34516559,34516578-34516797,
            34516819-34518931,34518941-34519193,34519269-34519401,
            34520597-34521114,34521207-34522115,34522195-34522368,
            34522833-34522882,34523963-34524035,34524413-34524477,
            34524736-34525522,34525622-34525878,34525989-34526109,
            34526315-34526956
          Length = 5320

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = +3

Query: 30   KTYDEVEYLEEDVTNNSQPEKD 95
            K+YDE++   ED TN++ P+K+
Sbjct: 2570 KSYDELKMFSEDSTNDAVPQKE 2591


>11_03_0146 +
           10744403-10744603,10745199-10745834,10745967-10746125,
           10746398-10747036,10748018-10748151,10748281-10748464,
           10748882-10749217,10751659-10751945,10752863-10753253,
           10753351-10753615,10753740-10753818,10754123-10754543
          Length = 1243

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 9   EEIGLEKKTYDEVEYLEE-DVTNNSQPEKDPITVCLT 116
           EEIGL+   Y  +E LE+ D+        DP T+C++
Sbjct: 100 EEIGLDAVAYKSLESLEQPDLIQWLMDRTDPDTMCIS 136


>03_06_0631 +
           35193737-35193906,35194010-35194076,35194237-35194426,
           35194571-35194767
          Length = 207

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 6   REEIGLEKKTYDEVEYLEEDVTNNSQPEKDPITVCLTRP 122
           +EE  LE+K  +EVE  +E+     + E+DP     +RP
Sbjct: 14  QEEKELEEKEEEEVEEEDENEEEEEEEEEDPQPYVPSRP 52


>08_02_0922 + 22646822-22647742
          Length = 306

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 10/12 (83%), Positives = 11/12 (91%)
 Frame = +2

Query: 2  GTRRNWTREENI 37
          GTR NWT+EENI
Sbjct: 60 GTRVNWTKEENI 71


>04_04_1700 -
           35465563-35465625,35465748-35465875,35466018-35466096,
           35466818-35467624
          Length = 358

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 283 GRXERRPSTRXNVCIHKGSXXNTLIHXCDALQXXXIXLQLRL 408
           G+ E+ P++  N  IH G+   T++H   +L+   + L + L
Sbjct: 213 GQTEQTPASPSNNSIHHGAVVTTVVHTRWSLEGTGVFLAIGL 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,297,044
Number of Sequences: 37544
Number of extensions: 157710
Number of successful extensions: 286
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 284
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 286
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)