Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060806.seq
         (508 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)                    27   6.7  

>SB_48138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1913

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = +3

Query: 57   EEDVTNNSQPEKD-PITVCLTRPKXLPRAKPIKKYL 161
            E +VTN S+   + PI   + +PK  P+AKP  K L
Sbjct: 1085 EAEVTNESEETSEMPIYAAVQKPKDKPKAKPKPKEL 1120


>SB_29494| Best HMM Match : Mpp10 (HMM E-Value=0.62)
          Length = 631

 Score = 27.5 bits (58), Expect = 6.7
 Identities = 11/26 (42%), Positives = 20/26 (76%)
 Frame = +3

Query: 18  GLEKKTYDEVEYLEEDVTNNSQPEKD 95
           G E+K  +EVE++E++  N+S+ EK+
Sbjct: 245 GEEQKEEEEVEWVEKEKVNSSEIEKE 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,841,910
Number of Sequences: 59808
Number of extensions: 189724
Number of successful extensions: 370
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 359
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1111677931
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)