Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060806.seq
         (508 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g78360.1 68414.m09132 glutathione S-transferase, putative sim...    29   2.4  
At4g08710.1 68417.m01439 hypothetical protein contains Pfam prof...    27   5.5  
At3g07160.1 68416.m00853 glycosyl transferase family 48 protein ...    27   7.3  
At4g22540.1 68417.m03253 oxysterol-binding family protein simila...    27   9.6  

>At1g78360.1 68414.m09132 glutathione S-transferase, putative
           similar to glutathione transferase GI:2853219 from
           [Carica papaya]
          Length = 222

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 22/55 (40%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +3

Query: 6   REEIGLEKKTYDEVEYLEEDVTNNSQP---EKDPITVCLTRPKXLPRAKPIKKYL 161
           R  I LE+K   + EY EEDV NN  P   E +PI    T P  +   KP+ + L
Sbjct: 18  RTMIALEEKGV-KYEYREEDVINNKSPLLLEMNPIH--KTIPVLIHNGKPVLESL 69


>At4g08710.1 68417.m01439 hypothetical protein contains Pfam profile
           PF03384: Drosophila protein of unknown function, DUF287
          Length = 715

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 486 SFARRCGPVRVWXRRSSAAWKY 421
           S  +R  P+R+W RR    WK+
Sbjct: 136 SLGKRPPPMRIWMRRHQLQWKF 157


>At3g07160.1 68416.m00853 glycosyl transferase family 48 protein
            similar to glucan synthase GB:AAD11794 [Filobasidiella
            neoformans var. neoformans]
          Length = 1931

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 332  KEVXXILSFTXATPYXSXISXYSCAYCT 415
            K V  +LSF+  TPY S +  YS A  T
Sbjct: 1089 KSVRKMLSFSVFTPYYSEVVLYSMAELT 1116


>At4g22540.1 68417.m03253 oxysterol-binding family protein similar
           to SP|P16258 Oxysterol-binding protein 1 {Oryctolagus
           cuniculus}; contains Pfam profiles PF00169: PH domain,
           PF01237: Oxysterol-binding protein
          Length = 721

 Score = 26.6 bits (56), Expect = 9.6
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 75  NSQPEKDPITVCLTRPKXLP 134
           NSQ  ++P+T  LTR + LP
Sbjct: 21  NSQSPEEPVTTALTRSRSLP 40


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,140,587
Number of Sequences: 28952
Number of extensions: 123189
Number of successful extensions: 262
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 256
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 908059136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)