Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060805.seq
         (651 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein Nfs1|S...   130   1e-31
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   7.2  
SPBC365.07c |||TATA element modulatory factor homolog |Schizosac...    25   7.2  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    25   9.5  
SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    25   9.5  

>SPBC21D10.11c |nfs1||iron-sulfur cluster assembly protein
           Nfs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 498

 Score =  130 bits (315), Expect = 1e-31
 Identities = 57/89 (64%), Positives = 71/89 (79%)
 Frame = +2

Query: 266 PLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAE 445
           P+Y D QAT+P+D RVLD MLP+    +GNPHSRTHAYGWE+E AVE AR+++A++INA+
Sbjct: 100 PIYMDFQATSPLDYRVLDSMLPFFTGIYGNPHSRTHAYGWEAEKAVENARQEIASVINAD 159

Query: 446 PKEIIFTSGATESNNISVKGVVDFMHQEK 532
           P+EIIFTSGATESNN  +KGV  F    K
Sbjct: 160 PREIIFTSGATESNNAILKGVARFYKSRK 188



 Score = 66.9 bits (156), Expect = 2e-12
 Identities = 29/47 (61%), Positives = 35/47 (74%)
 Frame = +1

Query: 511 RFYAPRKKHVITTQIEHKCVLDSCRALEGEGFRITYLPVPTEWNYNL 651
           RFY  RKKH+++ Q EHKCVLDS RAL+ EGF +T+LPV T    NL
Sbjct: 182 RFYKSRKKHLVSVQTEHKCVLDSLRALQEEGFEVTFLPVQTNGLINL 228


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +3

Query: 153  IKQKTQLNGNGVVIFEQSNFFSDSANEKFSLKHEKLAGLCISML 284
            I+ K Q + +  V   + N     A   FS + EKL   C+S +
Sbjct: 1190 IESKIQTHASFNVTITEHNHVESKARTGFSKREEKLVRSCLSKI 1233


>SPBC365.07c |||TATA element modulatory factor homolog
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 547

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 434 INAEPKEIIFTSGATESNNISVKGVVDFMHQEK 532
           + ++PK+I+ T G  E+N+ +V G VD +   K
Sbjct: 263 VKSKPKKIVTTGGIPENNDYTV-GKVDTLKVTK 294


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 408 KPENKWQI**MLNQKKLYLLQEQQNQITYLLKVWSILCTK 527
           +PEN+W    ++N + L    E+Q      +K W++L  K
Sbjct: 281 EPENRWCCESLVNYEALCKTLEKQKPTEADIKRWTLLVDK 320


>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 149  GFTNHRNHVFCQTEH 105
            GF NH+NH+F +T +
Sbjct: 1170 GFQNHKNHLFEETSN 1184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,771,524
Number of Sequences: 5004
Number of extensions: 57560
Number of successful extensions: 147
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)