Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060805.seq
         (651 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0529 + 10276063-10277439                                        141   4e-34
12_01_1062 - 10966940-10967140,10967314-10967413,10968069-109681...    51   7e-07
10_01_0147 - 1722947-1723168,1723268-1723464,1723654-1723690,172...    28   5.6  

>09_02_0529 + 10276063-10277439
          Length = 458

 Score =  141 bits (342), Expect = 4e-34
 Identities = 62/91 (68%), Positives = 76/91 (83%)
 Frame = +2

Query: 260 GRPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLIN 439
           GRPLY D QATTP+DPRVLD MLP+ +S +GNPHSRTH YGWES+AAVE+AR +VA+L+ 
Sbjct: 57  GRPLYMDMQATTPVDPRVLDAMLPFYLSRYGNPHSRTHLYGWESDAAVEEARARVASLVG 116

Query: 440 AEPKEIIFTSGATESNNISVKGVVDFMHQEK 532
           A+P+EI FTSGATE NNI+VKGV+ F    +
Sbjct: 117 ADPREIFFTSGATECNNIAVKGVMRFYRDRR 147



 Score = 69.3 bits (162), Expect = 2e-12
 Identities = 28/39 (71%), Positives = 33/39 (84%)
 Frame = +1

Query: 511 RFYAPRKKHVITTQIEHKCVLDSCRALEGEGFRITYLPV 627
           RFY  R++HV+TTQ EHKCVLDSCR L+ EGF +TYLPV
Sbjct: 141 RFYRDRRRHVVTTQTEHKCVLDSCRYLQQEGFEVTYLPV 179


>12_01_1062 -
           10966940-10967140,10967314-10967413,10968069-10968132,
           10968301-10968373,10968467-10968612,10969625-10969667,
           10969712-10969902,10970706-10970892,10971225-10971384,
           10971483-10971616,10972525-10972530
          Length = 434

 Score = 51.2 bits (117), Expect = 7e-07
 Identities = 28/76 (36%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
 Frame = +2

Query: 269 LYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLIN-AE 445
           +YFD  AT+     V+  +  Y   Y+ N H   H    ++  A E AR +VAN +N A 
Sbjct: 10  VYFDNGATSQKPSCVMKTLDEYYRFYNSNVHRGIHVLSAKATDAYESARTKVANFVNAAN 69

Query: 446 PKEIIFTSGATESNNI 493
            +EI+FT  ATE+ N+
Sbjct: 70  SREIVFTRNATEAINL 85


>10_01_0147 -
           1722947-1723168,1723268-1723464,1723654-1723690,
           1724688-1725584
          Length = 450

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +2

Query: 326 LPYLVSYHGNPHSRTHAYGWESEAAVEKAR--EQVANLINAEPKEIIFTS 469
           L Y     GN +S   AYGW S A  ++AR  E V      E    +FTS
Sbjct: 105 LRYTTRPEGNTNSNEDAYGWISHALQKQARVLEVVVFCCLFELDHSVFTS 154


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,424,447
Number of Sequences: 37544
Number of extensions: 317216
Number of successful extensions: 730
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 729
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)