Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060805.seq
         (651 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54924| Best HMM Match : No HMM Matches (HMM E-Value=.)              78   7e-15
SB_42032| Best HMM Match : Aminotran_5 (HMM E-Value=0.0007)            47   2e-05
SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)           36   0.022
SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)                    28   7.6  

>SB_54924| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 61

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 32/42 (76%), Positives = 36/42 (85%)
 Frame = +2

Query: 293 TPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKARE 418
           T  DPRV+D M+PY VS++GNPHSRTH YGWESE AVEKARE
Sbjct: 20  TTQDPRVVDAMMPYTVSFYGNPHSRTHQYGWESEKAVEKARE 61


>SB_42032| Best HMM Match : Aminotran_5 (HMM E-Value=0.0007)
          Length = 306

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 19/24 (79%), Positives = 20/24 (83%)
 Frame = +1

Query: 556 EHKCVLDSCRALEGEGFRITYLPV 627
           EHKCVLDSCR LEGEGF + YL V
Sbjct: 1   EHKCVLDSCRVLEGEGFEVDYLGV 24


>SB_42805| Best HMM Match : Aminotran_5 (HMM E-Value=8.7e-25)
          Length = 357

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 15/34 (44%), Positives = 23/34 (67%)
 Frame = +2

Query: 431 LINAEPKEIIFTSGATESNNISVKGVVDFMHQEK 532
           +INA   EIIFTSG TESNN+ +   ++   +++
Sbjct: 1   MINAHNSEIIFTSGGTESNNMVIHTAIEHYKKQR 34


>SB_58405| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 757

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = +2

Query: 317 DVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINAEPKE-IIFTSGATES 484
           D +  Y+ +++ N H+ T     ++     +ARE +   +NA  ++ +IF    T S
Sbjct: 192 DYIQNYVYAFYANTHTTTTTTSRQTTKFRNEAREIIKKCVNASAEDRVIFVGSGTTS 248


>SB_17729| Best HMM Match : TPR_2 (HMM E-Value=0.41)
          Length = 1234

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 256 FSCFNENFSFAESEKKLLCSNITTPF 179
           F C   N S  ++ +  LC+N TTPF
Sbjct: 504 FMCEQSNSSCVQTVQSYLCANSTTPF 529


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,726,331
Number of Sequences: 59808
Number of extensions: 382980
Number of successful extensions: 1096
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1014
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)