Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060805.seq
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical...   138   3e-33
U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical p...    31   0.94 
U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine rece...    28   5.0  
U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical pr...    28   5.0  
AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical ...    28   6.6  

>AF067211-14|AAC16992.2|  412|Caenorhabditis elegans Hypothetical
           protein B0205.6 protein.
          Length = 412

 Score =  138 bits (334), Expect = 3e-33
 Identities = 58/88 (65%), Positives = 74/88 (84%)
 Frame = +2

Query: 263 RPLYFDAQATTPMDPRVLDVMLPYLVSYHGNPHSRTHAYGWESEAAVEKAREQVANLINA 442
           +P+Y D QAT PMDPRV+D MLPY+++  GNPHSRTH+YGW++E  VE+ARE VANLI A
Sbjct: 11  QPIYLDVQATAPMDPRVVDAMLPYMINDFGNPHSRTHSYGWKAEEGVEQAREHVANLIKA 70

Query: 443 EPKEIIFTSGATESNNISVKGVVDFMHQ 526
           +P++IIFTSGATESNN+++KGV  F  Q
Sbjct: 71  DPRDIIFTSGATESNNLAIKGVAKFRKQ 98



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 25/33 (75%), Positives = 28/33 (84%)
 Frame = +1

Query: 529 KKHVITTQIEHKCVLDSCRALEGEGFRITYLPV 627
           K H+IT Q EHKCVLDSCR LE EGF++TYLPV
Sbjct: 101 KNHIITLQTEHKCVLDSCRYLENEGFKVTYLPV 133


>U23139-11|AAK31490.1|  328|Caenorhabditis elegans Hypothetical
           protein F13H8.9 protein.
          Length = 328

 Score = 30.7 bits (66), Expect = 0.94
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = +2

Query: 431 LINAEPKEIIFTSGATESNNISVKGVV 511
           + N + + ++FTSG TESNN  ++G +
Sbjct: 1   MFNVDGECVVFTSGGTESNNWVIEGTI 27



 Score = 29.5 bits (63), Expect = 2.2
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 535 HVITTQIEHKCVLDSCRALEGEG-FRITYLPV 627
           H+ITT IEH  +L+  +  E +G   +TY+ +
Sbjct: 38  HIITTNIEHPSILEPLKRREEDGEISVTYVSI 69


>U41263-6|AAC24432.1|  338|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 26 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 17  YEFEIILVKTLVKNCLFLNLQNCLICF 97
           Y F  ++VKTL+KN +F N    L+ F
Sbjct: 42  YYFFYLVVKTLIKNNIFSNCTRALLIF 68


>U28735-6|AAF99954.1| 1493|Caenorhabditis elegans Hypothetical
           protein F48E3.3 protein.
          Length = 1493

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 14/51 (27%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
 Frame = +2

Query: 473 ATESNNIS--VKGVVDFMHQEKSMSLLLKLNTNVF*THVVL*KVKXSELHI 619
           A ESN+IS  ++  +DF+  +++  L+LKL+   +    +  K+   +L +
Sbjct: 758 ACESNSISSYIRAALDFLPMDQAKRLILKLSNEEYAADFISGKITFDDLSV 808


>AL117207-9|CAB60400.1|  252|Caenorhabditis elegans Hypothetical
           protein Y60A3A.15 protein.
          Length = 252

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 183 GVVIFEQSNFFSDSANEKFSLKHEKLAGLCISMLKPLH 296
           G++IF +S F   + N    LK ++   +CI +L  LH
Sbjct: 176 GIMIFTESQF---NTNNGADLKFDRQLDICIGLLNQLH 210


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,175,469
Number of Sequences: 27780
Number of extensions: 319143
Number of successful extensions: 777
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 757
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 777
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)