Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060805.seq
         (651 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     23   1.9  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   5.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   5.9  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   7.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +3

Query: 168 QLNGNGVVIFEQSNFF 215
           Q+NGN +  F+ SN F
Sbjct: 157 QMNGNNITNFKNSNIF 172


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/42 (21%), Positives = 22/42 (52%)
 Frame = -1

Query: 564 FVFNLSSNDMLFSWCIKSTTPLTDMLFDSVAPEVNIISFGSA 439
           F+F+L+++ ++  + I       D L+ ++  ++     GSA
Sbjct: 282 FIFDLTTDTLIRKYIIPKEQVKEDSLYTNIVVDIRNEDCGSA 323


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 311 VLDVMLPYLVSYHGNPHSRTH 373
           +L +   Y+VS  G  HSR H
Sbjct: 14  LLSIASTYVVSVAGYKHSRRH 34


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 231 HLQNRKKNC 205
           H+Q RKKNC
Sbjct: 392 HMQPRKKNC 400


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -1

Query: 231 HLQNRKKNC 205
           H+Q RKKNC
Sbjct: 392 HMQPRKKNC 400


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 278 DAQATTPMDPRVLDV 322
           D   TTP+D + LDV
Sbjct: 254 DMNGTTPLDEKPLDV 268


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,314
Number of Sequences: 438
Number of extensions: 3951
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)