Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060803.seq
(647 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 128 9e-31
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 128 9e-31
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 128 9e-31
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 31 0.19
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 1.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 3.1
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 4.1
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 5.4
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 26 5.4
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 7.1
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 9.4
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 25 9.4
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 9.4
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 9.4
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 128 bits (308), Expect = 9e-31
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 453 DAKRTRVKLPSGAKKVLPSA 512
D +TRVKLPSGAKKV+PS+
Sbjct: 141 DTGKTRVKLPSGAKKVVPSS 160
Score = 110 bits (265), Expect = 1e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKEPSLLPKALH 280
V FR+PY ++T E + + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 509 SNRGMVGIVAGGGRIDKPILXAGRAYHSTR 598
S RG+VGIVAGGGRIDKP+L AGRA+H R
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYR 189
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 128 bits (308), Expect = 9e-31
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 453 DAKRTRVKLPSGAKKVLPSA 512
D +TRVKLPSGAKKV+PS+
Sbjct: 141 DTGKTRVKLPSGAKKVVPSS 160
Score = 110 bits (265), Expect = 1e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKEPSLLPKALH 280
V FR+PY ++T E + + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 509 SNRGMVGIVAGGGRIDKPILXAGRAYHSTR 598
S RG+VGIVAGGGRIDKP+L AGRA+H R
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYR 189
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 128 bits (308), Expect = 9e-31
Identities = 55/80 (68%), Positives = 67/80 (83%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++GH+
Sbjct: 81 MYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVGHDV 140
Query: 453 DAKRTRVKLPSGAKKVLPSA 512
D +TRVKLPSGAKKV+PS+
Sbjct: 141 DTGKTRVKLPSGAKKVVPSS 160
Score = 110 bits (265), Expect = 1e-25
Identities = 51/83 (61%), Positives = 67/83 (80%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 212 VHFRDPYKFKTRKEPSLLPKALH 280
V FR+PY ++T E + + ++
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMY 82
Score = 52.0 bits (119), Expect = 7e-08
Identities = 23/30 (76%), Positives = 26/30 (86%)
Frame = +2
Query: 509 SNRGMVGIVAGGGRIDKPILXAGRAYHSTR 598
S RG+VGIVAGGGRIDKP+L AGRA+H R
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYR 189
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 576 PAXKIGLSIRPPPATIPTMPLLLMAEPSWLQTVALLLYA 460
P K+GL+ PP + M L W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 1.8
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 233 KFKTRKEPSLLPKALHRPICL 295
K K+R+EPS ++L RP+C+
Sbjct: 99 KQKSRREPSKFERSLARPLCI 119
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 553 NTSTSSNNTDHASVADGRTFLAPDGSFT-LVRLASGLCPITVAK 425
N ++++NN ++ +V + +TF P S T V S + P + K
Sbjct: 322 NNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 441 GHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLF 566
G+N D K LP G + L SAT + ++ L+ V N F
Sbjct: 180 GYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPF 221
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 400 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 302
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.8 bits (54), Expect = 5.4
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 9/87 (10%)
Frame = +3
Query: 207 LLYTSAIHTSSRQGRSLHCSRRLYTGQFVYCGKKATLEVGNVMPVGAMPEGT-------- 362
LL + I+ + R L C R L+ ++ CGK L V +V + GT
Sbjct: 329 LLAKTKIYLTLEGTRDL-CIRNLFRKTWIICGKSTRLPV-SVFQIALQVAGTDLPKLHVE 386
Query: 363 -IVCNLEEKMGDRGRLARASGNFATVI 440
I+ N+ K RG ++R NF TV+
Sbjct: 387 AILANMISKGYMRGYISR---NFETVV 410
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 556 VNTSTSSNNTDHASVADGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 413
+N S + D +S + L DG+F LV G+C T+ +A
Sbjct: 96 INLIDSPGHVDFSSEVSSASRLC-DGAFVLVDAVEGVCSQTITVLRQA 142
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 9.4
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 559 FVNTSTSSNNTDHASVADGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFS 380
F N + T AS A+ F P F +L SGL V+ +P+ + +P
Sbjct: 242 FPNLPATVPITQAASTANA--FQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSF 299
Query: 379 SRL 371
SRL
Sbjct: 300 SRL 302
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/32 (28%), Positives = 19/32 (59%)
Frame = -1
Query: 620 ICQQLRLTLYCGMPFQLXK*VCQYVHLQQQYR 525
+C+ +LT YCG C+++H+++ Y+
Sbjct: 189 VCKDYKLTGYCGYGD-----TCKFLHMREDYK 215
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 53 QRKGAGSVFVSHTKKRKGAPKLRSLD 130
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/88 (23%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Frame = -3
Query: 336 ASHFQLQELLSFHNKQI--GLCRAFGSNEGSFLVLNLYGSRKCTTAKG---APLPGSWII 172
ASH Q+LLS + Q+ G+ + N SF+ L + + + + P+P +
Sbjct: 256 ASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVSATELSKSVDNAVLPIPPTTAP 315
Query: 171 SLTTP--LMYP*RSA*SKERSLGAPFLF 94
++ +P +P S+ + ++ +P LF
Sbjct: 316 AVVSPPASSFPLMSSAATSGNISSPALF 343
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,849,175
Number of Sequences: 5004
Number of extensions: 61587
Number of successful extensions: 195
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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