Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060803.seq
         (647 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      124   5e-29
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777...    31   0.60 
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611...    29   2.4  
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26...    29   2.4  
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555...    29   4.2  
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800...    28   5.6  
08_02_1264 + 25706009-25706148,25706613-25706716,25707108-257072...    28   7.4  
11_06_0377 - 22900042-22900452,22900527-22902236                       27   9.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  124 bits (300), Expect = 5e-29
 Identities = 61/126 (48%), Positives = 83/126 (65%), Gaps = 1/126 (0%)
 Frame = +3

Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
           +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E  +GDRG  ARASG++A VI HNP
Sbjct: 82  MYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVISHNP 141

Query: 453 DAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLFXKL-EGHTTVQGQT*LLAYVRG 629
           D   +R+KLPSGAKK++PS+  A    +           K    +   + +      VRG
Sbjct: 142 DNGTSRIKLPSGAKKIVPSSCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201

Query: 630 VAMNPV 647
           VAMNPV
Sbjct: 202 VAMNPV 207



 Score =  118 bits (283), Expect = 5e-27
 Identities = 54/74 (72%), Positives = 62/74 (83%)
 Frame = +2

Query: 32  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 212 VHFRDPYKFKTRKE 253
           V FR P+++K +KE
Sbjct: 61  VTFRHPFRYKHQKE 74



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 19/30 (63%), Positives = 22/30 (73%)
 Frame = +2

Query: 509 SNRGMVGIVAGGGRIDKPILXAGRAYHSTR 598
           S R M+G VAGGGR +KP+L AG AYH  R
Sbjct: 161 SCRAMIGQVAGGGRTEKPMLKAGNAYHKYR 190


>11_06_0325 +
           22376195-22377001,22377136-22377525,22377638-22377778,
           22377888-22378067,22378268-22378447,22378536-22378637,
           22378768-22378896,22379318-22379422,22379528-22379623
          Length = 709

 Score = 31.5 bits (68), Expect = 0.60
 Identities = 24/69 (34%), Positives = 33/69 (47%)
 Frame = +3

Query: 378 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLT 557
           EEK+ +   L    G    +IG N   K T +KL  G +K     T+   VLL E +VL 
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499

Query: 558 NLFXKLEGH 584
           N F + + H
Sbjct: 500 NYFEQNQIH 508


>06_01_0811 -
           6113491-6113925,6114079-6114185,6114569-6114788,
           6115112-6115199,6115301-6115431,6115924-6116099,
           6116465-6116529,6117014-6117094,6117219-6117358,
           6117446-6117532,6117614-6117827,6118102-6118260,
           6118860-6118936,6119629-6119796
          Length = 715

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 538 WRWTY*QTYFXSWKGIP 588
           W WTY  T+F SW  +P
Sbjct: 70  WSWTYWSTFFLSWSIVP 86


>06_01_0026 +
           265755-265968,267319-267468,267694-267738,267786-268460,
           268779-268843,268854-269073,269163-269438,269547-269663,
           269776-269853,269930-270184,270235-270323,270403-270816
          Length = 865

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = +2

Query: 416 LWKLRHCDWT 445
           LWK RHCDWT
Sbjct: 73  LWKCRHCDWT 82


>01_07_0112 -
           41149461-41151674,41151688-41153265,41154344-41155507,
           41155807-41156293,41156603-41156759,41157303-41157378
          Length = 1891

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 9/30 (30%), Positives = 14/30 (46%)
 Frame = -3

Query: 447 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 358
           C    W++   H+P  L H  +  +C  WY
Sbjct: 73  CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102


>02_05_0058 +
           25478274-25478421,25478963-25479142,25479714-25480007,
           25480261-25480564,25480672-25480751,25480765-25480934
          Length = 391

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = +3

Query: 372 NLEEKMGDRGRLARASGNFATVIGH--NPDAKRTRVKLPSGAKKVLPSATE 518
           N +EK+ D G +ARA  +F  V+GH   P+     VK  S       SA E
Sbjct: 329 NTKEKLHDLGEIARAKFDF-DVVGHYARPEVLSLTVKTESKLPVSFTSAAE 378


>08_02_1264 +
           25706009-25706148,25706613-25706716,25707108-25707284,
           25707775-25709708,25709781-25709867,25710058-25710091,
           25710293-25710381,25710522-25710674
          Length = 905

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +3

Query: 372 NLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDV 551
           N+E+  G+     +      +    N +  R  VKL SG KKV+ S       +L  + V
Sbjct: 727 NMEKSSGETSADKQDGDTSCSPSDGNSNNSRGSVKLASGDKKVMGSLKNLGQNMLENIQV 786

Query: 552 LTNLFXKLEG 581
           + + F +  G
Sbjct: 787 IESAFQQDRG 796


>11_06_0377 - 22900042-22900452,22900527-22902236
          Length = 706

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 309 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 476
           A L+ G   P+G + E   VC L +   D  R+ A  +G    + G  PD +  RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,563,164
Number of Sequences: 37544
Number of extensions: 442084
Number of successful extensions: 1295
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)