Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060803.seq
(647 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 140 9e-34
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 136 1e-32
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.007
SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.5
SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0) 29 4.3
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.7
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 7.5
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023) 27 9.9
SB_22151| Best HMM Match : MORN (HMM E-Value=6) 27 9.9
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 140 bits (339), Expect = 9e-34
Identities = 69/126 (54%), Positives = 87/126 (69%), Gaps = 1/126 (0%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 82 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 141
Query: 453 DAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLFXKL-EGHTTVQGQT*LLAYVRG 629
+ KRTRVKLPSG KKV+PS+ A ++ + K + + + VRG
Sbjct: 142 EKKRTRVKLPSGIKKVIPSSNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRG 201
Query: 630 VAMNPV 647
VAMNPV
Sbjct: 202 VAMNPV 207
Score = 132 bits (320), Expect = 2e-31
Identities = 61/74 (82%), Positives = 65/74 (87%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 212 VHFRDPYKFKTRKE 253
V FRDPY++K RKE
Sbjct: 61 VVFRDPYRYKLRKE 74
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 136 bits (329), Expect = 1e-32
Identities = 59/83 (71%), Positives = 71/83 (85%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI HN
Sbjct: 40 MYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVISHNV 99
Query: 453 DAKRTRVKLPSGAKKVLPSATEA 521
+ KRTRVKLPSG KKV+PS+ A
Sbjct: 100 EKKRTRVKLPSGIKKVIPSSNRA 122
Score = 62.9 bits (146), Expect = 2e-10
Identities = 27/32 (84%), Positives = 30/32 (93%)
Frame = +2
Query: 158 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKE 253
GVVK+IIHDPGRGAPLAVV FRDPY++K RKE
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKE 32
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.007
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +3
Query: 309 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 488
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 489 AKKVLPS 509
+K + S
Sbjct: 168 VEKEVSS 174
>SB_8046| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1304
Score = 29.5 bits (63), Expect = 2.5
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Frame = -2
Query: 385 FSSRLHTMVPSGIAPTGITFPTSRVAFFPQ*TNWPV*SL-------REQ*RLLPCLELVW 227
F+S L T +P+ P G+TF T +V F +NW + + +E R+L LE +W
Sbjct: 1067 FNSELVTSLPT---PPGLTFTTYKVVFLE--SNWRIGNTSGRVATDKELVRVLSSLEYLW 1121
Query: 226 IAEVYNSQRCTS--TRVMD 176
I + + S TR+MD
Sbjct: 1122 IRGRWTNLTDPSLKTRLMD 1140
>SB_47667| Best HMM Match : Ldl_recept_a (HMM E-Value=0)
Length = 3891
Score = 28.7 bits (61), Expect = 4.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 279 CRAFGSNEGSFLVLNLYGSRKCTTAKG 199
C+++ N + +NL GS KCT AKG
Sbjct: 2565 CKSYALNGCNQFCINLKGSFKCTCAKG 2591
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 5.7
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 464 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 291
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 290 KLACV 276
CV
Sbjct: 136 NQRCV 140
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -3
Query: 555 SIRPPPATIP-TMPLLLMAEPSWLQTVA 475
++RP P +P ++PLLL A P LQ+ A
Sbjct: 599 NLRPTPPPLPLSIPLLLQATPPHLQSTA 626
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.9 bits (59), Expect = 7.5
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = -1
Query: 149 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHDP*LRPVNLTS 6
I +V + + + R++SS C KRKL R E+ + D R + L +
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKDLKERNIELNA 517
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 236 TCMDRGSVQQPKVHLYQGHGLY 171
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.5 bits (58), Expect = 9.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +3
Query: 324 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 443
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_55367| Best HMM Match : Granulin (HMM E-Value=0.00023)
Length = 565
Score = 27.5 bits (58), Expect = 9.9
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +1
Query: 202 FGCCTLPRSIQVQDK 246
FGCC +P ++ QDK
Sbjct: 182 FGCCVMPNAVHCQDK 196
>SB_22151| Best HMM Match : MORN (HMM E-Value=6)
Length = 186
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/35 (40%), Positives = 17/35 (48%)
Frame = -3
Query: 285 GLCRAFGSNEGSFLVLNLYGSRKCTTAKGAPLPGS 181
G+ R G GSF +L LYG + A G P S
Sbjct: 129 GVARWSGVGFGSFRILRLYGFLRSVKADGLQRPSS 163
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,281,348
Number of Sequences: 59808
Number of extensions: 496439
Number of successful extensions: 1335
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1332
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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