Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060803.seq
         (647 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.63 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.83 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.9  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    23   3.4  
AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    22   4.4  
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    22   4.4  
AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex det...    22   4.4  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    22   4.4  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   4.4  
AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    22   4.4  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    22   4.4  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    22   4.4  
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    22   4.4  
AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex det...    22   4.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   4.4  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    22   4.4  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    22   4.4  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   4.4  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    22   4.4  
AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex det...    22   4.4  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.63
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 438 IGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLE 542
           IG+  + K+TR  LP+G +KVL    +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 12/45 (26%), Positives = 19/45 (42%)
 Frame = +1

Query: 490 PRRFCHQQQRHGRYCCWRWTY*QTYFXSWKGIPQYKVKRNCWHMY 624
           P   C Q++RH R    RWT    +    + + +  + R  W  Y
Sbjct: 5   PYARCIQERRHIRRELLRWTKNMVFVVGLERVAEELMGRRRWKQY 49


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 HFLFKIAHNGTLRHSSNRHHI 327
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 HFLFKIAHNGTLRHSSNRHHI 327
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 HFLFKIAHNGTLRHSSNRHHI 327
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 389 HFLFKIAHNGTLRHSSNRHHI 327
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERRCSR 239


>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 215 HTSSRYSRERSCSR 228


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 215 HTSSRYSRERSCSR 228


>AY569716-1|AAS86669.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 215 HTSSRYSRERSCSR 228


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 215 HTSSRYSRERSCSR 228


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569696-1|AAS86649.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569695-1|AAS86648.1|  414|Apis mellifera complementary sex
           determiner protein.
          Length = 414

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 215 HTSSRYSRERSCSR 228


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 231 HTSSRYSRERSCSR 244


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


>AY350615-1|AAQ57657.1|  410|Apis mellifera complementary sex
           determiner protein.
          Length = 410

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = +3

Query: 228 HTSSRQGRSLHCSR 269
           HTSSR  R   CSR
Sbjct: 226 HTSSRYSRERSCSR 239


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,937
Number of Sequences: 438
Number of extensions: 4399
Number of successful extensions: 28
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)