Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060803.seq
(647 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 133 1e-31
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 127 5e-30
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 123 1e-28
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 47 1e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 47 1e-05
At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing ... 29 2.7
At3g27670.1 68416.m03455 expressed protein 28 4.7
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 28 6.1
At1g52260.1 68414.m05897 thioredoxin family protein similar to p... 28 6.1
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 27 8.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 8.1
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 133 bits (321), Expect = 1e-31
Identities = 65/126 (51%), Positives = 86/126 (68%), Gaps = 1/126 (0%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI HNP
Sbjct: 83 MYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIAHNP 142
Query: 453 DAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLFXKL-EGHTTVQGQT*LLAYVRG 629
++ TRVKLPSG+KK+LPSA A + F K + + + VRG
Sbjct: 143 ESNTTRVKLPSGSKKILPSACRAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRG 202
Query: 630 VAMNPV 647
VAMNPV
Sbjct: 203 VAMNPV 208
Score = 111 bits (266), Expect = 5e-25
Identities = 53/75 (70%), Positives = 61/75 (81%), Gaps = 1/75 (1%)
Frame = +2
Query: 32 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 208
MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60
Query: 209 VVHFRDPYKFKTRKE 253
V FR P+++ +KE
Sbjct: 61 RVAFRHPFRYMKQKE 75
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 127 bits (307), Expect = 5e-30
Identities = 64/126 (50%), Positives = 84/126 (66%), Gaps = 1/126 (0%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI HNP
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIAHNP 141
Query: 453 DAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLFXKL-EGHTTVQGQT*LLAYVRG 629
D+ TR+KLPSG+KK++PS A + K + + + VRG
Sbjct: 142 DSDTTRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRG 201
Query: 630 VAMNPV 647
VAMNPV
Sbjct: 202 VAMNPV 207
Score = 118 bits (285), Expect = 3e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 212 VHFRDPYKFKTRKE 253
V FR P++FK +KE
Sbjct: 61 VTFRHPFRFKKQKE 74
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 515 RGMVGIVAGGGRIDKPILXAGRAYHSTR 598
R M+G VAGGGR +KP+L AG AYH R
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYR 190
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 123 bits (296), Expect = 1e-28
Identities = 61/126 (48%), Positives = 82/126 (65%), Gaps = 1/126 (0%)
Frame = +3
Query: 273 LYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNP 452
+YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI HNP
Sbjct: 82 MYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIAHNP 141
Query: 453 DAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLFXKL-EGHTTVQGQT*LLAYVRG 629
D +R+KLPSG+KK++PS A + K + + + VRG
Sbjct: 142 DNDTSRIKLPSGSKKIVPSGCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRG 201
Query: 630 VAMNPV 647
VAMNPV
Sbjct: 202 VAMNPV 207
Score = 118 bits (285), Expect = 3e-27
Identities = 55/74 (74%), Positives = 62/74 (83%)
Frame = +2
Query: 32 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 211
MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60
Query: 212 VHFRDPYKFKTRKE 253
V FR P++FK +KE
Sbjct: 61 VAFRHPFRFKKQKE 74
Score = 42.7 bits (96), Expect = 2e-04
Identities = 18/28 (64%), Positives = 21/28 (75%)
Frame = +2
Query: 515 RGMVGIVAGGGRIDKPILXAGRAYHSTR 598
R M+G VAGGGR +KP+L AG AYH R
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYR 190
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/108 (32%), Positives = 52/108 (48%)
Frame = +3
Query: 321 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 500
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 501 LPSATEAWSVLLLEVDVLTNLFXKLEGHTTVQGQT*LLAYVRGVAMNP 644
+ + A + T K G + G + VRGVAMNP
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYK-AGQSRWLG---IRPKVRGVAMNP 161
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 46.8 bits (106), Expect = 1e-05
Identities = 35/108 (32%), Positives = 52/108 (48%)
Frame = +3
Query: 321 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKV 500
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTKW 117
Query: 501 LPSATEAWSVLLLEVDVLTNLFXKLEGHTTVQGQT*LLAYVRGVAMNP 644
+ + A + T K G + G + VRGVAMNP
Sbjct: 118 INAKCRATIGTVSNPSHGTKKLYK-AGQSRWLG---IRPKVRGVAMNP 161
>At1g22910.3 68414.m02863 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM); similar to
GB:AAC33496
Length = 347
Score = 29.1 bits (62), Expect = 2.7
Identities = 24/81 (29%), Positives = 35/81 (43%), Gaps = 1/81 (1%)
Frame = -3
Query: 408 PDDLYHPFSLQDCTQWYPQA*-LQQASHFQLQELLSFHNKQIGLCRAFGSNEGSFLVLNL 232
P YH S + + P +QQ S +L + ++ + R FGS + S+ L L
Sbjct: 210 PQPFYHHLSSYNPHHYSPPTFSMQQGSRNRLSASTTSYSLPLKKLRVFGSYQASYHHLLL 269
Query: 231 YGSRKCTTAKGAPLPGSWIIS 169
SR KG SW+IS
Sbjct: 270 LRSRAILWFKGC----SWLIS 286
>At3g27670.1 68416.m03455 expressed protein
Length = 1841
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -1
Query: 335 HHISNFKSCFLSTINKLACVEPSGAMKAPSLS*TCMDRGSV 213
H + + CF I++L V SGA++ L +C+ G +
Sbjct: 1204 HEVDDIIGCFKDLISELLIVRKSGALRKRLLMASCIGAGDL 1244
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +2
Query: 470 SKATVWSQEGSAISNRGMVGIVAGGGRIDKPILXAGRAYHS 592
SK +W +A+ RG++ + I +L GR HS
Sbjct: 650 SKTFMWKTLSAAVRMRGLISVNVASSGIASLLLQGGRTAHS 690
>At1g52260.1 68414.m05897 thioredoxin family protein similar to
protein disulfide isomerase GI:5902592 from [Volvox
carteri f. nagariensis], GI:2708314 from Chlamydomonas
reinhardtii; contains Pfam profile: PF00085 Thioredoxin
Length = 537
Score = 27.9 bits (59), Expect = 6.1
Identities = 20/86 (23%), Positives = 37/86 (43%)
Frame = +3
Query: 381 EKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTN 560
E GD + F V+G+ P R+ +P A+ SVL+ ++D +
Sbjct: 81 ELNGDYTKRVIDGNEFVMVLGYAPWCARSAELMPRFAEAATALKEIGSSVLMAKID--GD 138
Query: 561 LFXKLEGHTTVQGQT*LLAYVRGVAM 638
+ K+ ++G LL +V G ++
Sbjct: 139 RYSKIASELEIKGFPTLLLFVNGTSL 164
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 27.5 bits (58), Expect = 8.1
Identities = 16/49 (32%), Positives = 27/49 (55%)
Frame = -1
Query: 401 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEPSGAMK 255
+++T+ I NG SSN++ + F+ ST+N LA VE + + K
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSK 184
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 8.1
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 431 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 318
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,284,427
Number of Sequences: 28952
Number of extensions: 337465
Number of successful extensions: 975
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 922
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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