Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q653B9 Cluster: Putative uncharacterized protein P0635G...    32   7.3  
UniRef50_UPI0000E4799F Cluster: PREDICTED: hypothetical protein;...    32   9.6  
UniRef50_Q2R4V7 Cluster: Transposon protein, putative, unclassif...    32   9.6  

>UniRef50_Q653B9 Cluster: Putative uncharacterized protein
           P0635G10.29; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0635G10.29 - Oryza sativa subsp. japonica (Rice)
          Length = 225

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +3

Query: 213 LETRLRRHSHPRDIPLHRRPCRR 281
           ++ R RRH HPR +PLH R  RR
Sbjct: 66  VDHRQRRHHHPRRLPLHGRRLRR 88


>UniRef50_UPI0000E4799F Cluster: PREDICTED: hypothetical protein;
           n=2; Strongylocentrotus purpuratus|Rep: PREDICTED:
           hypothetical protein - Strongylocentrotus purpuratus
          Length = 834

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -1

Query: 296 ESSPVSATWPPVEGNIAWMRVPPKPSLELNG 204
           ES+P S  +PPV  N+A  R+PP+   +  G
Sbjct: 756 ESNPTSPKYPPVPVNLATRRLPPRSDQDREG 786


>UniRef50_Q2R4V7 Cluster: Transposon protein, putative,
           unclassified; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Transposon protein, putative,
           unclassified - Oryza sativa subsp. japonica (Rice)
          Length = 582

 Score = 31.9 bits (69), Expect = 9.6
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 439 IHFFFCSTHCNSIRVVADNDTGRPD 365
           +H FFC   C + R ++  DT RPD
Sbjct: 4   VHIFFCIIDCKAYRYLSTGDTRRPD 28


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 368,800,581
Number of Sequences: 1657284
Number of extensions: 5237151
Number of successful extensions: 17777
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17777
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34156095254
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)