Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601...    31   0.58 
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519...    29   2.3  
12_01_0175 + 1304138-1304255,1304597-1304793,1304873-1304953,130...    27   7.2  
11_01_0174 + 1394229-1394346,1394695-1394891,1394972-1395052,139...    27   7.2  
08_01_0221 - 1753458-1753732,1753908-1754055                           27   7.2  
10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555           27   9.5  

>05_04_0299 -
           19958776-19958858,19958883-19959012,19960131-19960175,
           19960252-19960370,19960450-19960543,19961824-19961985,
           19962117-19962266,19962472-19962537,19962934-19962981,
           19963654-19963866,19963953-19964078,19964155-19964232,
           19964600-19964671,19965522-19965953,19966863-19966925,
           19967497-19967898
          Length = 760

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +1

Query: 196 TIPPLSSRLGLGGTRIHAIFPSTGGHVAETGEDS 297
           T+PP S RLG+  +++H +FPS   H+ E  + S
Sbjct: 638 TLPPSSYRLGVRPSKLHELFPS---HITEVLQQS 668


>10_08_0570 +
           18851451-18851723,18851894-18851928,18851929-18851998,
           18852089-18852187,18852276-18852365,18852430-18852920,
           18853015-18853102,18853204-18853245,18853548-18853574,
           18853817-18853996,18854249-18854416,18854501-18854710
          Length = 590

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/37 (43%), Positives = 22/37 (59%)
 Frame = -1

Query: 326 CPXLXHAPXRESSPVSATWPPVEGNIAWMRVPPKPSL 216
           C    HAP R SSP +A+ PPV  + A +  P +P+L
Sbjct: 299 CRPCDHAP-RRSSPAAASAPPVSASSALL--PRRPAL 332


>12_01_0175 +
           1304138-1304255,1304597-1304793,1304873-1304953,
           1305080-1305289,1305426-1305503,1305576-1305878
          Length = 328

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 97  YCIGAGSKRRKSSETRGCACRWKRVVG 17
           YC+     +RK+S   GC   W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244


>11_01_0174 +
           1394229-1394346,1394695-1394891,1394972-1395052,
           1395184-1395393,1395531-1395608,1395682-1395990
          Length = 330

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 97  YCIGAGSKRRKSSETRGCACRWKRVVG 17
           YC+     +RK+S   GC   W R+ G
Sbjct: 218 YCLKKKFSQRKASRACGCGTEWPRLEG 244


>08_01_0221 - 1753458-1753732,1753908-1754055
          Length = 140

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 299 RESSPVSATWPPVEGNIAWMRVPP 228
           R   P  A WP   G+  W R PP
Sbjct: 52  RGQKPCRAIWPADNGDAVWRRSPP 75


>10_01_0346 - 3828511-3828635,3829124-3829154,3829368-3830555
          Length = 447

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +1

Query: 199 IPPLSSRLGLGGTRIHAIFPSTGGHVAETG 288
           +PP+ S LG+G  R++   P+T    A TG
Sbjct: 42  VPPMLSSLGVGRVRLYDADPATLRAFANTG 71


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,274,450
Number of Sequences: 37544
Number of extensions: 181316
Number of successful extensions: 674
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 654
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)