Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)                    29   1.8  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   1.8  
SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)                     27   9.7  

>SB_41610| Best HMM Match : RWP-RK (HMM E-Value=3.7)
          Length = 195

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -2

Query: 394 VADNDTGRPDRTASCLTAFXASSAQXYXMRLYESPLPSRRHGLRWRGISRGCE 236
           V D   G+        T    +SA+    R++    P R HG++   IS  CE
Sbjct: 126 VKDEGKGKSTNLQKSKTRIGNASAKKETERVHRPATPGREHGVQHNQISTSCE 178


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = -1

Query: 290  SPVSATWPPVEGNIAWMRVPPKPS 219
            SPV+A++PP +G+ + +R+PP  S
Sbjct: 1468 SPVAASFPPGQGSSSSLRLPPNAS 1491


>SB_208| Best HMM Match : zf-C2H2 (HMM E-Value=1.7)
          Length = 836

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
 Frame = -2

Query: 286 PSRR--HGLRWRGISRGCECLLS 224
           PS R  HG+RWR   + C C LS
Sbjct: 77  PSHRDSHGIRWRSNRKNCCCPLS 99


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,677,882
Number of Sequences: 59808
Number of extensions: 177147
Number of successful extensions: 473
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 473
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1215643300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)