Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcript...    24   3.7  
Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL...    23   8.6  
AF395079-1|AAK97461.1|  371|Anopheles gambiae basic helix-loop-h...    23   8.6  

>AB097127-1|BAC82595.1| 1209|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1209

 Score = 23.8 bits (49), Expect = 3.7
 Identities = 8/22 (36%), Positives = 12/22 (54%)
 Frame = -2

Query: 415 HCNSIRVVADNDTGRPDRTASC 350
           HC++  V+ +  TGR   T  C
Sbjct: 558 HCDTNNVMTEEQTGRRKNTQGC 579


>Z69976-1|CAA93816.1|  204|Anopheles gambiae ribosomal protein RL10
           protein.
          Length = 204

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 67  KSSETRGCACRWKRVVGGAXRA 2
           KSS   G A R+ + +GG+ RA
Sbjct: 169 KSSRGLGKAYRYSQTIGGSRRA 190


>AF395079-1|AAK97461.1|  371|Anopheles gambiae basic
           helix-loop-helix transcriptionfactor ASH protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 8.6
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = +1

Query: 202 PPLSSRLGLGGTRIHAIFPSTGGHVAETG 288
           P   S  G+GG    ++   TGGH    G
Sbjct: 265 PSFGSDHGIGGVTSSSVHLHTGGHSTVLG 293


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 375,287
Number of Sequences: 2352
Number of extensions: 5716
Number of successful extensions: 21
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 49897362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)