Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical ...    28   3.7  
Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical pr...    27   6.5  

>Z81106-3|CAB03222.1|   84|Caenorhabditis elegans Hypothetical
           protein R06C1.4 protein.
          Length = 84

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -2

Query: 436 HFFFCSTHCNSIRVVADNDTGRP 368
           ++F    H N++R+V D +TGRP
Sbjct: 24  NYFAAVGHVNNVRIVYDRETGRP 46


>AF024502-5|AAB70376.1|  456|Caenorhabditis elegans Hypothetical
           protein M151.5 protein.
          Length = 456

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -2

Query: 439 IHFFFCSTHCNSI-RVVADNDTGRPDRTASCLTAFXA 332
           + FF  + HC  + RV+   +  +PDRT   + A+ A
Sbjct: 9   LFFFIFAVHCQIVTRVILFKNANQPDRTEELVKAYLA 45


>Z81108-1|CAB03236.1|   83|Caenorhabditis elegans Hypothetical
           protein R09B3.2 protein.
          Length = 83

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 436 HFFFCSTHCNSIRVVADNDTGRP 368
           +FF      N++R+V D +TGRP
Sbjct: 23  NFFSSIGQINNVRIVCDRETGRP 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,204,465
Number of Sequences: 27780
Number of extensions: 117974
Number of successful extensions: 325
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 308
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 325
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1070714938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)