Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    21   6.0  
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    21   8.0  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    21   8.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   8.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   8.0  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   8.0  

>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 219 TRLRRHSHPRDIPLHRRP 272
           TRLRR + P   P + RP
Sbjct: 30  TRLRREAEPEAEPGNNRP 47


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 219 TRLRRHSHPRDIPLHRRP 272
           TRLRR + P   P + RP
Sbjct: 29  TRLRREAKPEAEPGNNRP 46


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 219 TRLRRHSHPRDIPLHRRP 272
           TRLRR + P   P + RP
Sbjct: 1   TRLRREAKPEAEPGNNRP 18


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 238  RIHAIFPSTGGHVAETGEDSRXGACXRXG 324
            R+ A   S GGHV      S   AC   G
Sbjct: 1311 RVPARITSFGGHVVRPWRGSATLACNAVG 1339


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 11/29 (37%), Positives = 12/29 (41%)
 Frame = +1

Query: 238  RIHAIFPSTGGHVAETGEDSRXGACXRXG 324
            R+ A   S GGHV      S   AC   G
Sbjct: 1307 RVPARITSFGGHVVRPWRGSATLACNAVG 1335


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.0 bits (42), Expect = 8.0
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 208 LSSRLGLGGTRIHAIFPSTGG 270
           LSS LG        ++PST G
Sbjct: 290 LSSALGRSACHSPGVYPSTAG 310


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 99,451
Number of Sequences: 438
Number of extensions: 1468
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15213684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)