Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060801.seq
         (536 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g30810.1 68417.m04365 serine carboxypeptidase S10 family prot...    29   2.6  
At4g30720.1 68417.m04354 expressed protein hypothetical protein ...    27   6.0  
At1g67880.1 68414.m07751 glycosyl transferase family 17 protein ...    27   6.0  
At1g12990.1 68414.m01508 glycosyl transferase family 17 protein ...    27   7.9  

>At4g30810.1 68417.m04365 serine carboxypeptidase S10 family protein
           similar to serine-type carboxypeptidase (SP:P55748)
           [Hordeum vulgare]
          Length = 479

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -2

Query: 433 FFFCSTHCNSIRVVADNDTGRPDRTASCLTAFXASSAQXYXMRLYESPLPSR 278
           F   S  CN I  +AD + G  D+  S  T    ++A    M L + P+ SR
Sbjct: 259 FIHSSKQCNKILEIADKEIGNIDQ-YSVFTPACVANASQSNMLLKKRPMTSR 309


>At4g30720.1 68417.m04354 expressed protein hypothetical protein -
           Synechocystis sp. (strain PCC 6803),PIR2:S76076
          Length = 749

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +1

Query: 199 IPPLSSRLGLGGTRIHAIFPSTGGHVAETGEDS 297
           +PP S RLG+    +H +FP+   H+ E   +S
Sbjct: 621 LPPSSYRLGVKSANLHELFPA---HITEALRES 650


>At1g67880.1 68414.m07751 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 390

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 400 GWSCSGCYRRRSELV 444
           GW CS C+RR SE V
Sbjct: 290 GWHCSFCFRRISEFV 304


>At1g12990.1 68414.m01508 glycosyl transferase family 17 protein low
           similarity to beta-1,4-mannosyl-glycoprotein
           beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
           from Mus musculus [SP|Q10470], Rattus norvegicus
           [SP|Q02527], Homo sapiens [SP|Q09327]; contains Pfam
           profile PF04724 :Glycosyltransferase family 17
          Length = 392

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 400 GWSCSGCYRRRSELV 444
           GW CS C+RR SE +
Sbjct: 292 GWHCSFCFRRISEFI 306


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,969,554
Number of Sequences: 28952
Number of extensions: 115003
Number of successful extensions: 382
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 365
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 993966856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)