Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060800.seq
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             112   2e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)          101   6e-22
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                97   9e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 77   1e-14
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.074
SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)              33   0.13 
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    32   0.30 
SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)               31   0.52 
SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)              30   1.6  
SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)                     30   1.6  
SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)                      29   2.8  
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.7  
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              28   4.8  
SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)                    28   4.8  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  112 bits (270), Expect = 2e-25
 Identities = 50/83 (60%), Positives = 64/83 (77%)
 Frame = +3

Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
           D+ L +F+T    +T++DAPGH+DFI NMITG +QAD A+L+V A TGEFEAG    GQT
Sbjct: 2   DVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQT 61

Query: 435 REHALLAFTLGVKQLIVGVNKMD 503
           REHA+L  +LGV QLIV +NK+D
Sbjct: 62  REHAILVRSLGVTQLIVAINKLD 84


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score =  101 bits (241), Expect = 6e-22
 Identities = 50/107 (46%), Positives = 72/107 (67%), Gaps = 4/107 (3%)
 Frame = +3

Query: 273 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 452
           F+T   + T++DAPGH+ F+ NMI+G +QAD  VL+++A  GEFE G  + GQTREHA+L
Sbjct: 217 FDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFERGGQTREHAML 276

Query: 453 AFTLGVKQLIVGVNKMDSTNHHTVS-PXLRHQEGSIS---YIKKIGY 581
           A T GVK L++ VNKMD     TV     R++E  +    ++KK+G+
Sbjct: 277 AKTAGVKHLVILVNKMDDP---TVKWNEERYEEIKVKLTPFLKKVGF 320



 Score = 43.2 bits (97), Expect = 2e-04
 Identities = 17/40 (42%), Positives = 28/40 (70%)
 Frame = +2

Query: 122 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  + ER+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 44/49 (89%), Positives = 46/49 (93%)
 Frame = +2

Query: 38  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEM 184
           M KEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKESSEV 49


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 76.6 bits (180), Expect = 1e-14
 Identities = 33/35 (94%), Positives = 34/35 (97%)
 Frame = +3

Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQ 359
           DIALWKFET KYYVT+IDAPGHRDFIKNMITGTSQ
Sbjct: 26  DIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 20/20 (100%), Positives = 20/20 (100%)
 Frame = +2

Query: 182 MGKGSFKYAWVLDKLKAERE 241
           MGKGSFKYAWVLDKLKAERE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 34.3 bits (75), Expect = 0.074
 Identities = 24/70 (34%), Positives = 34/70 (48%)
 Frame = +3

Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
           +T ID PGH  F      G +  D  VL+VAA  G      ++  ++  HA+ A      
Sbjct: 78  ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTVESIRHAMHAKV---- 129

Query: 474 QLIVGVNKMD 503
            LIV +NK+D
Sbjct: 130 PLIVAINKID 139


>SB_43410| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-26)
          Length = 541

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +3

Query: 303 IDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLI 482
           +D PGH   +  M+ G +  D A+L++A              QT EH      + +K ++
Sbjct: 69  VDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMKLKHIL 122

Query: 483 VGVNKMD 503
           +  NK+D
Sbjct: 123 ILQNKID 129


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 32.3 bits (70), Expect = 0.30
 Identities = 16/32 (50%), Positives = 19/32 (59%)
 Frame = +2

Query: 38  MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
           M K+    N+ VI HVD GKST T  L+ K G
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAG 43



 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
           + + +ID+PGH DF   +       D A+++V   +G
Sbjct: 99  FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 135


>SB_3698| Best HMM Match : GTP_EFTU (HMM E-Value=9.3e-34)
          Length = 240

 Score = 31.5 bits (68), Expect = 0.52
 Identities = 22/85 (25%), Positives = 33/85 (38%)
 Frame = +3

Query: 258 IALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTR 437
           I  +  +     +  +D PGH  F      G    D  +++VAA             QT+
Sbjct: 128 IGAYSVKVGDQKIAFLDTPGHEAFTAMRARGAQVTDLVIIVVAADDDVMP-------QTK 180

Query: 438 EHALLAFTLGVKQLIVGVNKMDSTN 512
           E    A   GV  +I  +NK+D  N
Sbjct: 181 EAISHAQAAGV-PIIFAINKIDKPN 204


>SB_18949| Best HMM Match : GTP_EFTU (HMM E-Value=1.7e-10)
          Length = 783

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 300 IIDAPGHRDFIKNMITGTSQADCAVLIV 383
           IID PGH  F      G+S  D A+L+V
Sbjct: 682 IIDTPGHESFSNLRSRGSSLCDMAILVV 709


>SB_7329| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 359

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/35 (25%), Positives = 19/35 (54%)
 Frame = +3

Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
           + I+D PGH+DF ++     +  D  ++++    G
Sbjct: 81  INILDTPGHKDFAEDTFRTLTAVDSVIVVIDVAKG 115


>SB_56013| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 539

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = +2

Query: 53  THINIVVIGHVDSGKSTTTGHLIY 124
           T I + V+G+V+SGKST  G L Y
Sbjct: 111 TDIRMAVLGNVESGKSTLLGVLTY 134


>SB_3739| Best HMM Match : Pkinase (HMM E-Value=0)
          Length = 490

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +2

Query: 449 ARFHPRCQTAHRXSKQNGFHEPPYSEPRXEASRRKYLIHQ 568
           A F PR +  +R  ++N  H  PYS+   E   RK+ +H+
Sbjct: 118 ADFAPRARQPNREHRENERHNRPYSQGYHE-EERKHSLHR 156


>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2670

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 62   NIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEK 160
            N  ++ HVD GKST    L+   G I K +  K
Sbjct: 1943 NFSIVAHVDHGKSTLADRLLEVTGTISKSSDNK 1975


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 22/91 (24%), Positives = 36/91 (39%)
 Frame = +3

Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
           +T++D PGH   IK +I G      A +I   GT   E G  ++G+ +            
Sbjct: 104 MTLVDCPGHASLIKTIIGG------AQIIGECGT--IEGGFGQSGKVKIRIPGGLLPDTA 155

Query: 474 QLIVGVNKMDSTNHHTVSPXLRHQEGSISYI 566
           + + G +K        V       +G+I  I
Sbjct: 156 KQLAGASKKKGKGAQAVEEGEESVKGNIKVI 186


>SB_28816| Best HMM Match : PAS (HMM E-Value=0.0047)
          Length = 405

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -3

Query: 296 NIVLASFELP-ESNIIVIPTHAQPLVCPIP 210
           N VL  F+LP +SN +V+P  +Q  + P P
Sbjct: 173 NDVLTEFDLPPQSNTVVVPPTSQRPILPAP 202


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +3

Query: 345 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTNHHTV 524
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    + + HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 525 S 527
           +
Sbjct: 849 A 849


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,052,571
Number of Sequences: 59808
Number of extensions: 340537
Number of successful extensions: 763
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)