Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060800.seq
(583 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation fact... 173 1e-43
U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation fact... 173 1e-43
U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation fact... 153 1e-37
U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation fact... 146 1e-35
U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation fact... 138 2e-33
Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical pr... 113 7e-26
Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical pr... 113 7e-26
Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical pr... 109 2e-24
U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation f... 69 3e-12
AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial... 69 3e-12
D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation fact... 66 1e-11
D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation fact... 66 1e-11
AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongatio... 66 1e-11
Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical p... 42 3e-04
Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical pr... 39 0.002
L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical pr... 35 0.048
AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical ... 34 0.064
AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical ... 34 0.085
AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical... 33 0.11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 33 0.15
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 33 0.20
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 33 0.20
L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding pro... 31 0.60
DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic tr... 31 0.60
AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditi... 31 0.60
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 30 1.0
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 30 1.0
Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical pr... 30 1.4
Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical p... 29 1.8
Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical p... 29 1.8
Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical pr... 29 3.2
Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical pr... 28 5.6
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 27 7.4
Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical pr... 27 9.7
AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein. 27 9.7
AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein. 27 9.7
>U51994-6|AAA96068.1| 463|Caenorhabditis elegans Elongation factor
protein 4, isoforma protein.
Length = 463
Score = 173 bits (420), Expect = 1e-43
Identities = 85/110 (77%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 435 REHALLAFTLGVKQLIVGVNKMDSTNHHTVSPXLRHQEGSIS-YIKKIGY 581
REHALLA TLGVKQLIV NKMDST +S +IKKIGY
Sbjct: 134 REHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGY 183
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERE 241
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U40935-2|AAA81688.1| 463|Caenorhabditis elegans Elongation factor
protein 3 protein.
Length = 463
Score = 173 bits (420), Expect = 1e-43
Identities = 85/110 (77%), Positives = 90/110 (81%), Gaps = 1/110 (0%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 435 REHALLAFTLGVKQLIVGVNKMDSTNHHTVSPXLRHQEGSIS-YIKKIGY 581
REHALLA TLGVKQLIV NKMDST +S +IKKIGY
Sbjct: 134 REHALLAQTLGVKQLIVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGY 183
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERE 241
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-9|AAO21383.1| 267|Caenorhabditis elegans Elongation factor
protein 4, isoformc protein.
Length = 267
Score = 153 bits (370), Expect = 1e-37
Identities = 70/76 (92%), Positives = 74/76 (97%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA GTGEFEAGISKNGQT
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVACGTGEFEAGISKNGQT 133
Query: 435 REHALLAFTLGVKQLI 482
REHALLA TLGVKQL+
Sbjct: 134 REHALLAQTLGVKQLV 149
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERE 241
DKLKAERE
Sbjct: 61 DKLKAERE 68
>U51994-7|AAO21384.1| 429|Caenorhabditis elegans Elongation factor
protein 4, isoformd protein.
Length = 429
Score = 146 bits (353), Expect = 1e-35
Identities = 67/68 (98%), Positives = 67/68 (98%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAERE 241
DKLKAERE
Sbjct: 61 DKLKAERE 68
Score = 94.7 bits (225), Expect(2) = 7e-22
Identities = 41/44 (93%), Positives = 44/44 (100%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 386
DIALWKFET+KYY+TIIDAPGHRDFIKNMITGTSQADCAVL+VA
Sbjct: 74 DIALWKFETAKYYITIIDAPGHRDFIKNMITGTSQADCAVLVVA 117
Score = 26.6 bits (56), Expect(2) = 7e-22
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +3
Query: 477 LIVGVNKMDSTNHHTVSPXLRHQEGSIS-YIKKIGY 581
L+V NKMDST +S +IKKIGY
Sbjct: 114 LVVACNKMDSTEPPFSEARFTEITNEVSGFIKKIGY 149
>U51994-8|AAO21382.1| 77|Caenorhabditis elegans Elongation factor
protein 4, isoformb protein.
Length = 77
Score = 138 bits (335), Expect = 2e-33
Identities = 63/67 (94%), Positives = 64/67 (95%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 217
MGKEK HINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL
Sbjct: 1 MGKEKVHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60
Query: 218 DKLKAER 238
DKLK +
Sbjct: 61 DKLKVTK 67
>Z81098-7|CAI79193.2| 592|Caenorhabditis elegans Hypothetical
protein K07A12.4b protein.
Length = 592
Score = 113 bits (273), Expect = 7e-26
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT
Sbjct: 237 DIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQT 296
Query: 435 REHALLAFTLGVKQLIVGVNKMDSTN 512
+EHALL +LGV QLIV VNK+D+ +
Sbjct: 297 KEHALLLRSLGVTQLIVAVNKLDTVD 322
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 167 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 226
Query: 227 KAERE 241
+ ERE
Sbjct: 227 EEERE 231
>Z81098-6|CAB03180.3| 610|Caenorhabditis elegans Hypothetical
protein K07A12.4a protein.
Length = 610
Score = 113 bits (273), Expect = 7e-26
Identities = 53/86 (61%), Positives = 64/86 (74%)
Frame = +3
Query: 255 DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQT 434
DI FETS + ++DAPGH+DFI NMITGTSQAD A+L+V A TGEFE G GQT
Sbjct: 255 DIGRTSFETSHRRIVLLDAPGHKDFISNMITGTSQADAAILVVNATTGEFETGFENGGQT 314
Query: 435 REHALLAFTLGVKQLIVGVNKMDSTN 512
+EHALL +LGV QLIV VNK+D+ +
Sbjct: 315 KEHALLLRSLGVTQLIVAVNKLDTVD 340
Score = 83.0 bits (196), Expect = 1e-16
Identities = 36/65 (55%), Positives = 48/65 (73%)
Frame = +2
Query: 47 EKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKL 226
+K IN++V+GHVD+GKST GHL++ +D RTI+KF+ EA GK SF YAWVLD+
Sbjct: 185 DKDLINLIVVGHVDAGKSTLMGHLLHDLEVVDSRTIDKFKHEAARNGKASFAYAWVLDET 244
Query: 227 KAERE 241
+ ERE
Sbjct: 245 EEERE 249
>Z92835-1|CAB07395.2| 532|Caenorhabditis elegans Hypothetical
protein H19N07.1 protein.
Length = 532
Score = 109 bits (261), Expect = 2e-24
Identities = 49/104 (47%), Positives = 70/104 (67%), Gaps = 1/104 (0%)
Frame = +3
Query: 273 FETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALL 452
FET K + TI+DAPGH+ F+ NMI G +QAD AVL+++A GEFE G + GQTREH++L
Sbjct: 182 FETEKRHFTILDAPGHKSFVPNMIVGANQADLAVLVISARRGEFETGFDRGGQTREHSML 241
Query: 453 AFTLGVKQLIVGVNKMDSTNHHTVSPXLRHQEGSIS-YIKKIGY 581
T GVK L++ VNKMD + EG ++ +++K+G+
Sbjct: 242 VKTAGVKHLVILVNKMDDPTVKWEEERFKEIEGKLTPFLRKLGF 285
Score = 79.0 bits (186), Expect = 2e-15
Identities = 34/67 (50%), Positives = 48/67 (71%)
Frame = +2
Query: 41 GKEKTHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLD 220
G K HIN+V +GHVD+GKST G L++ G +DKRT+EK+E+EA+E G+ S+ +W +D
Sbjct: 104 GTHKEHINMVFVGHVDAGKSTIGGQLMFLTGMVDKRTLEKYEREAKEKGRESWYLSWCMD 163
Query: 221 KLKAERE 241
ERE
Sbjct: 164 TNDEERE 170
>U80437-9|AAN84843.1| 439|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 2 protein.
Length = 439
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +3
Query: 306 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 485
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 486 GVNKMD 503
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTT 109
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>AB010028-1|BAA31345.1| 439|Caenorhabditis elegans mitochondrial
elongation factorTu homologue protein.
Length = 439
Score = 68.5 bits (160), Expect = 3e-12
Identities = 35/66 (53%), Positives = 43/66 (65%)
Frame = +3
Query: 306 DAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIV 485
D PGH DFIKNMI GTSQ D AVL++AA G E QT+EH +LA +GVK + +
Sbjct: 114 DCPGHSDFIKNMICGTSQMDVAVLVIAATDGVME-------QTKEHLILAKQVGVKNMAI 166
Query: 486 GVNKMD 503
+NK D
Sbjct: 167 FINKAD 172
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +2
Query: 50 KTHINIVVIGHVDSGKSTTT 109
K ++N+ IGH+D GK+T T
Sbjct: 43 KINVNVGTIGHIDHGKTTLT 62
>D38472-1|BAA07492.1| 495|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 495
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 270 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 449
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 106 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 158
Query: 450 LAFTLGV--KQLIVGVNKMD 503
LA +GV ++V +NK+D
Sbjct: 159 LARQVGVPLDNIVVFMNKVD 178
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 45 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 104
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 105 LEYETAKR 112
>D38471-1|BAA07491.1| 496|Caenorhabditis elegans elongation factor
Tu homologueprecursor protein.
Length = 496
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 270 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 449
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 450 LAFTLGV--KQLIVGVNKMD 503
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 106 LEYETAKR 113
>AC024859-25|AAK29979.1| 496|Caenorhabditis elegans Tu elongation
factor (ef-tu), mitochondrialprotein 1 protein.
Length = 496
Score = 66.5 bits (155), Expect = 1e-11
Identities = 37/80 (46%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Frame = +3
Query: 270 KFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHAL 449
++ET+K + ID PGH D+IKNMITG +Q + A+L+VAA G QTREH L
Sbjct: 107 EYETAKRHYAHIDCPGHADYIKNMITGAAQMEGAILVVAATDGPMP-------QTREHLL 159
Query: 450 LAFTLGV--KQLIVGVNKMD 503
LA +GV ++V +NK+D
Sbjct: 160 LARQVGVPLDNIVVFMNKVD 179
Score = 36.3 bits (80), Expect = 0.016
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Frame = +2
Query: 44 KEKTHINIVVIGHVDSGKSTTTG---HLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWV 214
++K H+N+ IGHVD GK+T T ++ G R E + +E +G A+
Sbjct: 46 RDKPHLNVGTIGHVDHGKTTLTSAITKILATSKGAKYRKYEDIDNAPEEKARGITINAFH 105
Query: 215 LDKLKAER 238
L+ A+R
Sbjct: 106 LEYETAKR 113
>Z70780-15|CAA94822.2| 702|Caenorhabditis elegans Hypothetical
protein F46B6.6a protein.
Length = 702
Score = 41.9 bits (94), Expect = 3e-04
Identities = 29/73 (39%), Positives = 34/73 (46%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
VT +D PGH F G AD VL+VAA G E QT + A V
Sbjct: 206 VTFLDTPGHAAFASMRARGAKGADIVVLVVAADDGVKE-------QTAQSIKFAKDANV- 257
Query: 474 QLIVGVNKMDSTN 512
QL+V VNK+D N
Sbjct: 258 QLVVAVNKIDKPN 270
>Z99709-7|CAB16862.2| 500|Caenorhabditis elegans Hypothetical
protein C47B2.7b protein.
Length = 500
Score = 39.1 bits (87), Expect = 0.002
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
+ +ID PGH I+ ++ ++ D A++I+ + AGI QT EH LLA
Sbjct: 74 LALIDCPGHSGLIRAVLAASTVFDMAIVII-----DVVAGIQP--QTAEHLLLASKFCPN 126
Query: 474 QLIVGVNKMDSTNHHTVS 527
++I+ +NK D +S
Sbjct: 127 RVIIVLNKCDLAEKSKIS 144
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTT 109
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>L13200-4|AAA28191.2| 645|Caenorhabditis elegans Hypothetical
protein ZK1236.1 protein.
Length = 645
Score = 34.7 bits (76), Expect = 0.048
Identities = 24/72 (33%), Positives = 35/72 (48%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 467
Y + +ID PGH DF + + D +L+VAA G QT + LAF
Sbjct: 102 YLLNLIDTPGHVDFSAEVSRSLAVCDGILLLVAANQG-------VQAQTIANFWLAFEKN 154
Query: 468 VKQLIVGVNKMD 503
+ Q+I +NK+D
Sbjct: 155 I-QIIPVINKID 165
Score = 32.3 bits (70), Expect = 0.26
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGI---DKRTIEKFEKEAQ 178
N ++ HVD GKST L+ CG + K+ ++K + E +
Sbjct: 44 NFGIVAHVDHGKSTLADRLLEMCGAVPPGQKQMLDKLQVERE 85
>AC006714-2|AAK29716.2| 689|Caenorhabditis elegans Hypothetical
protein Y119D3B.14 protein.
Length = 689
Score = 34.3 bits (75), Expect = 0.064
Identities = 15/26 (57%), Positives = 18/26 (69%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGI 139
NI VI HVD+GK+T T L+Y G I
Sbjct: 27 NIGVIAHVDAGKTTVTERLLYLAGAI 52
>AC025716-9|AAK39619.1| 469|Caenorhabditis elegans Hypothetical
protein Y39G10AR.8 protein.
Length = 469
Score = 33.9 bits (74), Expect = 0.085
Identities = 20/71 (28%), Positives = 32/71 (45%)
Frame = +3
Query: 291 YVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 470
+V+ +D PGH + M+ G + D A L+VA QT EH + +
Sbjct: 128 HVSFVDCPGHDILMATMLNGAAVMDAAFLLVAGNEP------CPQPQTSEHLAAVEIMQL 181
Query: 471 KQLIVGVNKMD 503
L++ NK+D
Sbjct: 182 NHLMILQNKVD 192
>AC024817-55|AAF59563.3| 366|Caenorhabditis elegans Hypothetical
protein Y54G2A.28 protein.
Length = 366
Score = 33.5 bits (73), Expect = 0.11
Identities = 18/43 (41%), Positives = 24/43 (55%)
Frame = -1
Query: 496 LFTPTMSCLTPRVKASKACSRV*PFLEIPASNSPVPAATMSTA 368
LF PT+SC+ + AS S P + PA N VP AT+S +
Sbjct: 13 LFDPTLSCMATQNSASATLSCANPTVAAPA-NDDVPEATLSVS 54
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 33.1 bits (72), Expect = 0.15
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +2
Query: 62 NIVVIGHVDSGKSTTTGHLIYKCGGID 142
NI + H+DSGK+T T ++Y G ID
Sbjct: 46 NIGISAHIDSGKTTVTERILYYAGRID 72
Score = 28.3 bits (60), Expect = 4.2
Identities = 23/70 (32%), Positives = 30/70 (42%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVK 473
+ IID PGH DF + D AVL++ G G G+ T L + +
Sbjct: 114 INIIDTPGHVDFTVEVERALRVLDGAVLVL-CGVG----GVQSQTFTVNRQLARYNV--- 165
Query: 474 QLIVGVNKMD 503
I VNKMD
Sbjct: 166 PFICFVNKMD 175
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.3 bits (60), Expect = 4.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVSG 146
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 32.7 bits (71), Expect = 0.20
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +2
Query: 38 MGKEKTHINIVVIGHVDSGKSTTTGHLIYKCG 133
M +++ N+ VI HVD GKST T L+ K G
Sbjct: 13 MDRKRNIRNMSVIAHVDHGKSTLTDSLVSKAG 44
Score = 28.7 bits (61), Expect = 3.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 288 YYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
+ + +ID+PGH DF + D A+++V +G
Sbjct: 110 FLINLIDSPGHVDFSSEVTAALGVTDGALVVVDCVSG 146
>L40996-1|AAA86431.1| 593|Caenorhabditis elegans GTP-binding
protein protein.
Length = 593
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 124
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>DQ867020-1|ABI49097.1| 1074|Caenorhabditis elegans eukaryotic
translation initiationfactor eIF5B protein.
Length = 1074
Score = 31.1 bits (67), Expect = 0.60
Identities = 23/77 (29%), Positives = 35/77 (45%)
Frame = +3
Query: 300 IIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQL 479
IID PGH F G+S D A+L+V + G+ QT E +L G
Sbjct: 553 IIDTPGHESFSNLRTRGSSLCDFAILVV-----DIMHGLEP--QTIE-SLKLLIKGKTPF 604
Query: 480 IVGVNKMDSTNHHTVSP 530
++ +NK+D + +P
Sbjct: 605 VIALNKIDRLYEYESNP 621
>AF125969-2|AAD14761.1| 613|Caenorhabditis elegans Caenorhabditis
gtp-binding proteinprotein 1 protein.
Length = 613
Score = 31.1 bits (67), Expect = 0.60
Identities = 15/37 (40%), Positives = 23/37 (62%)
Frame = +2
Query: 14 FVIRD*PKMGKEKTHINIVVIGHVDSGKSTTTGHLIY 124
++IRD P K+ + V+G+VD+GKST G L +
Sbjct: 127 WIIRD-PPTEKDFIEARVAVVGNVDAGKSTLLGVLTH 162
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 279 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
+ Y + IID PGH +F M AD V++V A G
Sbjct: 198 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 237
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 30.3 bits (65), Expect = 1.0
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = +3
Query: 279 TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 398
+ Y + IID PGH +F M AD V++V A G
Sbjct: 73 SKSYLLNIIDTPGHVNFSDEMTASYRLADGVVVMVDAHEG 112
>Z72518-3|CAB63415.2| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 186 VKDPSNMLGYWTN*RLSVSXYHNDIALWKFETSKYYV--TIIDAPGHRDFIK 335
V DP+ + G WT + S H+++ KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z49131-7|CAA88980.3| 704|Caenorhabditis elegans Hypothetical
protein ZC373.1 protein.
Length = 704
Score = 29.9 bits (64), Expect = 1.4
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Frame = +3
Query: 186 VKDPSNMLGYWTN*RLSVSXYHNDIALWKFETSKYYV--TIIDAPGHRDFIK 335
V DP+ + G WT + S H+++ KF + V T++DA G +K
Sbjct: 342 VYDPTKLAGEWTQDPETKSWSHSEVEFNKFNPERPLVLDTVLDAIGKTPLVK 393
>Z66513-12|CAI46602.1| 492|Caenorhabditis elegans Hypothetical
protein F54D5.5b protein.
Length = 492
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 272 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 305
>Z66513-11|CAA91332.3| 427|Caenorhabditis elegans Hypothetical
protein F54D5.5a protein.
Length = 427
Score = 29.5 bits (63), Expect = 1.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 140 DKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAERE 241
+KR ++ EKE + F Y LDK+K ER+
Sbjct: 207 EKRKLKDMEKECNDAKNAMFHYMNQLDKVKKERD 240
>Z99709-6|CAB16863.1| 459|Caenorhabditis elegans Hypothetical
protein C47B2.7a protein.
Length = 459
Score = 28.7 bits (61), Expect = 3.2
Identities = 10/17 (58%), Positives = 15/17 (88%)
Frame = +2
Query: 59 INIVVIGHVDSGKSTTT 109
+N+ ++GHVDSGK+T T
Sbjct: 14 LNLGILGHVDSGKTTLT 30
>Z81138-2|CAB03473.1| 2265|Caenorhabditis elegans Hypothetical
protein W05B2.4 protein.
Length = 2265
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = +2
Query: 443 CLARFHPRCQTAHRXSKQNGFHEPPYSEPRXEASRRKYLIHQEDWLQ 583
C R H R T HR +Q +H+ Y + SR+ I ++ +L+
Sbjct: 25 CTIRKHTRYLTIHRVVEQKSWHQLAYEDRLRRESRKIPKICRKQFLK 71
>Z75710-2|CAB00025.2| 381|Caenorhabditis elegans Hypothetical
protein D1081.4 protein.
Length = 381
Score = 27.9 bits (59), Expect = 5.6
Identities = 17/34 (50%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = +3
Query: 294 VTIIDAPGHRDFI--KNMITGTSQADCAVLIVAA 389
V IID+ G RDFI KN+ GT AD +++ AA
Sbjct: 73 VQIIDSSGSRDFIGMKNLYIGT--ADAFLVVFAA 104
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 383
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 27.5 bits (58), Expect = 7.4
Identities = 10/30 (33%), Positives = 19/30 (63%)
Frame = +3
Query: 294 VTIIDAPGHRDFIKNMITGTSQADCAVLIV 383
+ +ID+PGH DF + + +D A+L++
Sbjct: 85 INLIDSPGHVDFSGEVTSALILSDIALLLI 114
>Z49938-5|CAD31752.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z49938-4|CAA90189.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>Z46811-2|CAD31753.1| 1467|Caenorhabditis elegans Hypothetical
protein C09D8.1b protein.
Length = 1467
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>Z46811-1|CAA86842.3| 2180|Caenorhabditis elegans Hypothetical protein
C09D8.1a protein.
Length = 2180
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
>AF316540-1|AAK01633.1| 1487|Caenorhabditis elegans PTP-3B protein.
Length = 1487
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 338 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 384
>AF316539-1|AAK01632.1| 2200|Caenorhabditis elegans PTP-3A protein.
Length = 2200
Score = 27.1 bits (57), Expect = 9.7
Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Frame = +3
Query: 192 DPSNMLGYWTN*RLSVSXYHNDIALWKFETSK---YYVTIIDAPGHR 323
DP+ ++G TN R+ + + W FE+ K + V + PG+R
Sbjct: 1051 DPAALVGPPTNVRVEATSNSTAVVQWDFESQKADSFVVKYMHEPGNR 1097
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,711,287
Number of Sequences: 27780
Number of extensions: 252972
Number of successful extensions: 744
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 689
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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