Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV060799.seq
         (645 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    36   2e-04
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    22   5.0  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    22   5.0  

>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 36.3 bits (80), Expect = 2e-04
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = +1

Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
           EV V+G +   PI  FE +    ++ + VK  GY +PT IQ    P+ +  R
Sbjct: 145 EVKVTGNDAPPPITSFETSGLRPHLLENVKKSGYTKPTAIQKYAIPVILSGR 196



 Score = 31.9 bits (69), Expect = 0.005
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHI--NNQPP 602
           K +G  +  A     +     G++L+   +TGSGKT A++LP I ++  +  PP
Sbjct: 174 KKSGYTKPTAIQKYAIPVILSGRDLMSCAQTGSGKTAAFMLPIIHNLLSDKNPP 227


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -3

Query: 613 LLRIGGWLFMCTMAGKM*ANV 551
           LL IGGW F  T   ++ +NV
Sbjct: 593 LLAIGGWAFGSTPFKELTSNV 613


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 11/45 (24%), Positives = 22/45 (48%)
 Frame = +2

Query: 401 NTLKKQIFLIMCNKV*RQWVTKNRRLFKLKAGR*LCWKEFSWRTQ 535
           ++ +K  F ++ +K+ +    K    +K       CW EF+ +TQ
Sbjct: 202 DSARKPFFKLLTSKIYKVLEEK----YKTSGSLYTCWSEFTQKTQ 242


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,058
Number of Sequences: 336
Number of extensions: 3116
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16552695
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)