Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060799.seq
(645 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 96 3e-21
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 57 2e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 50 4e-07
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 38 0.001
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 38 0.002
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 37 0.003
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 36 0.004
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 35 0.009
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 35 0.009
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 35 0.009
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 35 0.012
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 35 0.012
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 34 0.015
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 34 0.020
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 33 0.047
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 32 0.062
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 31 0.11
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 30 0.25
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 30 0.33
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 29 0.57
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|... 29 0.57
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 29 0.57
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 27 1.8
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 27 1.8
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 27 3.1
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 25 7.1
SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2 |... 25 7.1
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 25 7.1
SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|c... 25 9.3
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 96.3 bits (229), Expect = 3e-21
Identities = 43/87 (49%), Positives = 55/87 (63%)
Frame = +1
Query: 256 WDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYV 435
W + +L PF K+FY H V RS EV EYR E+ V G+ V P+ FEEA FP+YV
Sbjct: 74 WKNETLIPFQKDFYKEHENVRNRSDAEVTEYRKEKEIVVHGLNVPKPVTTFEEAGFPNYV 133
Query: 436 QQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ VK +G++ PTPIQ Q WP+AM R
Sbjct: 134 LKEVKQLGFEAPTPIQQQAWPMAMSGR 160
Score = 64.1 bits (149), Expect = 2e-11
Identities = 29/44 (65%), Positives = 35/44 (79%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G+++VG+ TGSGKTL+Y LPAIVHIN QP + DGPI LVLA
Sbjct: 159 GRDMVGISATGSGKTLSYCLPAIVHINAQPLLSPGDGPIVLVLA 202
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 57.2 bits (132), Expect = 2e-09
Identities = 21/43 (48%), Positives = 35/43 (81%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVL 638
G++++GV KTGSGKT+A++LP HI +Q P++ +GPIA+++
Sbjct: 455 GRDVIGVAKTGSGKTIAFLLPMFRHIKDQRPLKTGEGPIAIIM 497
Score = 44.4 bits (100), Expect = 1e-05
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQQ 441
++ + F K+FY + SP EV+E R + + + + G++ P+ + +
Sbjct: 372 INYEDFKKDFYVEPEELKNLSPAEVDELRASLDGIKIRGIDCPKPVTSWSQCGLSAQTIS 431
Query: 442 GVKTMGYKEPTPIQAQGWP 498
+ ++GY++PT IQAQ P
Sbjct: 432 VINSLGYEKPTSIQAQAIP 450
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/46 (50%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSD---GPIALVLA 641
K+L+G+ +TGSGKT A+I+P I+ I+ PP+ S+ GP A+VLA
Sbjct: 287 KDLIGIAETGSGKTAAFIIPLIIAISKLPPLTESNMHLGPYAVVLA 332
Score = 41.5 bits (93), Expect = 1e-04
Identities = 17/56 (30%), Positives = 36/56 (64%)
Frame = +1
Query: 349 RNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ ++ +++ G ++ NP++ +EEA P + + +K + YKEP+ IQ P+ +L+R
Sbjct: 232 KEDYNISIKGDDLPNPLRNWEEAGLPSEMLKVLKKVNYKEPSSIQRAAIPV-LLQR 286
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 37.9 bits (84), Expect = 0.001
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
PI F+E + +++G+K YKEPTPIQA WP + R
Sbjct: 165 PILQFDELDVSAKLREGLKN--YKEPTPIQAATWPYLLAGR 203
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/27 (48%), Positives = 24/27 (88%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHIN 590
G+++VG+ +TGSGKT+A+ +PA+ ++N
Sbjct: 202 GRDVVGIAETGSGKTVAFGIPALQYLN 228
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 37.5 bits (83), Expect = 0.002
Identities = 13/28 (46%), Positives = 23/28 (82%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINN 593
G+++VG+ +TGSGKT A+++P I H+ +
Sbjct: 106 GRDVVGMARTGSGKTAAFVIPMIEHLKS 133
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 36.7 bits (81), Expect = 0.003
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
K+ G + + G++++G KTGSGKTLA+++P I
Sbjct: 105 KEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTI 148
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 36.3 bits (80), Expect = 0.004
Identities = 14/26 (53%), Positives = 22/26 (84%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHI 587
G++++G KTGSGKTLA+I+P I ++
Sbjct: 76 GRDILGAAKTGSGKTLAFIVPLIENL 101
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 35.1 bits (77), Expect = 0.009
Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSD-GPIALVL 638
GK+LV +TGSGKT AY++P + + Q I + G AL+L
Sbjct: 51 GKDLVAQARTGSGKTAAYLIPILELLLKQKQIDENQRGIFALLL 94
Score = 25.4 bits (53), Expect = 7.1
Identities = 9/44 (20%), Positives = 24/44 (54%)
Frame = +1
Query: 376 GVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
G+ + + F + N +Q+ + +++PT +Q++ P+A+
Sbjct: 6 GIREESSEKTFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLAL 49
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 35.1 bits (77), Expect = 0.009
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 516 NLVGVLKTGSGKTLAYILPAIVHINNQPP 602
NL+ VL TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 35.1 bits (77), Expect = 0.009
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 516 NLVGVLKTGSGKTLAYILPAIVHINNQPP 602
NL+ VL TG GK+L++++PA++ Q P
Sbjct: 1208 NLITVLPTGGGKSLSFLIPALIEKKRQTP 1236
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/36 (44%), Positives = 21/36 (58%)
Frame = +3
Query: 492 LADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
+A G+N +G KTGSGKT A+ LP I + P
Sbjct: 38 IAQILEGRNCIGGAKTGSGKTAAFALPIIEKWSKDP 73
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/46 (34%), Positives = 24/46 (52%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
V VSG ++ P+ F ++ Q +K GY +PTP+Q PI
Sbjct: 158 VEVSGGDIE-PVNEFTSPPLNSHLLQNIKLSGYTQPTPVQKNSIPI 202
Score = 26.6 bits (56), Expect = 3.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAI 578
G++L+ +TGSGKT ++ P +
Sbjct: 206 GRDLMACAQTGSGKTAGFLFPIL 228
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 34.3 bits (75), Expect = 0.015
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +3
Query: 507 VGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
+GK++VG TGSGKT A+I+P + + +P
Sbjct: 295 LGKDIVGAAVTGSGKTAAFIVPILERLLYRP 325
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/29 (44%), Positives = 21/29 (72%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQP 599
++++G+ +TGSGKT A+ LP I + N P
Sbjct: 84 RDVIGLAQTGSGKTAAFALPVIQELWNNP 112
Score = 30.7 bits (66), Expect = 0.19
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
F+E D + + + +G+K PTPIQ + P+ + +R
Sbjct: 48 FKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKR 84
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 32.7 bits (71), Expect = 0.047
Identities = 14/43 (32%), Positives = 25/43 (58%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVH 584
G + S + ++ +G +++G TGSGKTLA+ +P + H
Sbjct: 141 GFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEH 183
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 32.3 bits (70), Expect = 0.062
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +1
Query: 340 EEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
+E N E+T S E N + FEE N + + +G+ GY+ P+ +Q++
Sbjct: 3 DEIMENVELTTS--EDVNAVSSFEEMNLKEDLLRGIYAYGYETPSAVQSR 50
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 31.5 bits (68), Expect = 0.11
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Frame = +3
Query: 534 KTGSGKTLAYILPAIVHINNQPP--IRRSDGPIALVLA 641
+TGSGKTLAY+LP + + P R+ G A+++A
Sbjct: 186 QTGSGKTLAYLLPIVQRLIRLPKNLHTRTSGIYAVIMA 223
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 30.3 bits (65), Expect = 0.25
Identities = 14/20 (70%), Positives = 16/20 (80%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILP 572
K+LV TGSGKTLAY+LP
Sbjct: 39 KDLVVEAVTGSGKTLAYLLP 58
Score = 28.7 bits (61), Expect = 0.76
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
F+ N +++ V G+K+ TP+QA P+
Sbjct: 3 FQSINIDKWLKNAVAAQGFKKMTPVQANAIPL 34
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 29.9 bits (64), Expect = 0.33
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQ 596
G +R + + G++++ K G+GKT A+++P++ ++ +
Sbjct: 63 GFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTK 109
Score = 29.5 bits (63), Expect = 0.43
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + G+ G++ P+PIQ + PIA+ R LA +K K
Sbjct: 46 FEDYYLKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGK 94
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 29.1 bits (62), Expect = 0.57
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Frame = +3
Query: 468 TDAYSSSRLADSYVG--KNLVGVLKTGSGKTLAYILPAIVHINNQPP 602
T+ + R A +G ++L+ TGSGKT+AY+ P + + P
Sbjct: 67 TECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVP 113
>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 732
Score = 29.1 bits (62), Expect = 0.57
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +3
Query: 159 RLDLATVAVDLEDLEDLVGKKNSLEVRTCVAQLGFCF 269
+ D++ + + + + +NS+++ +C+ Q+GFCF
Sbjct: 274 KFDISLIMALISAIINKTASQNSIKIISCLYQVGFCF 310
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 29.1 bits (62), Expect = 0.57
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIV 581
GK++ ++ TG GK+L Y LPA++
Sbjct: 534 GKDVFILMPTGGGKSLCYQLPAVI 557
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 27.5 bits (58), Expect = 1.8
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
+N V KTG+GKTLA++L A + P S +++L+
Sbjct: 77 ENAVVQAKTGTGKTLAFLLVAFKDVLKGKPRLNSSKIHSVILS 119
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.8
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +3
Query: 501 SYVGKNLVGVLKTGSGKTLAYILPAI 578
SY G V TGSGKTL+Y++P +
Sbjct: 171 SYGGDVCVSAA-TGSGKTLSYVIPIV 195
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 26.6 bits (56), Expect = 3.1
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 251 PVGILFHSNLSTKTFMIHILQFSKDHHMKSKSTEIIT 361
PV + +STK H+L S D H+ ++ E++T
Sbjct: 331 PVSQYAYRAISTKALR-HVLNLSYDFHLNKRAGEVLT 366
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/46 (23%), Positives = 22/46 (47%)
Frame = +3
Query: 450 DNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHI 587
D+G + + S +G +++ K+G GKT ++L + I
Sbjct: 68 DSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI 113
>SPAC17A5.07c |ulp2||SUMO deconjugating cysteine peptidase Ulp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 652
Score = 25.4 bits (53), Expect = 7.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +1
Query: 259 DSVSLQPFNKN----FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ 402
D V L PF K FYDP P LK + +E+ + + V +H P+Q
Sbjct: 112 DVVEL-PFTKGGYGGFYDPRPGCLKFTTHEINVSYTDTSIPV----IHIPVQ 158
>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.1
Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 2/22 (9%)
Frame = -3
Query: 457 PLSLHLVAHNQENL--LLQSIE 398
PL LH+V+HN+++L LQ IE
Sbjct: 217 PLYLHIVSHNRKDLTVALQEIE 238
>SPBC2F12.15c |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +1
Query: 238 EHASPSWDSV--SLQPFNKNFYDPHPTVLKRSPY 333
E S SW S QPFN +Y+ ++ +SP+
Sbjct: 216 ESMSSSWSRYTHSTQPFNVGWYENWCQIMGKSPF 249
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,510,215
Number of Sequences: 5004
Number of extensions: 50713
Number of successful extensions: 157
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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