Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060799.seq
(645 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.) 69 3e-12
SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41) 61 9e-10
SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.) 54 8e-08
SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17) 52 4e-07
SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36) 50 2e-06
SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22) 47 1e-05
SB_43842| Best HMM Match : RNB (HMM E-Value=0) 47 2e-05
SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.004
SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.005
SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19) 38 0.005
SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.012
SB_37351| Best HMM Match : DEAD (HMM E-Value=0) 36 0.037
SB_52320| Best HMM Match : DEAD (HMM E-Value=0) 36 0.037
SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07) 35 0.049
SB_9558| Best HMM Match : DEAD (HMM E-Value=0) 34 0.11
SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11
SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.80
SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1
SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.4
SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42) 30 1.4
SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24) 30 1.9
SB_6554| Best HMM Match : Isy1 (HMM E-Value=0) 30 1.9
SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057) 29 3.2
SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40) 29 3.2
SB_17563| Best HMM Match : DEAD (HMM E-Value=0) 29 4.3
SB_2247| Best HMM Match : DEAD (HMM E-Value=0) 29 4.3
SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31) 28 7.5
SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_19645| Best HMM Match : Smr (HMM E-Value=8.2) 28 7.5
SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07) 28 7.5
SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16) 28 7.5
SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.9
>SB_16431| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 790
Score = 68.9 bits (161), Expect = 3e-12
Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +PFNKNFY+ HP + K+S E+++ R + VSG P F F +
Sbjct: 467 PEKSKIDYKPFNKNFYEEHPEITKQSKQEIDDLRKKMGIKVSGAMPARPCISFAHFGFDE 526
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSK----RVPAKRWP 561
+ ++ + Y +PT IQ Q PIA+ R + +K + A WP
Sbjct: 527 QMMASIRKLEYTQPTQIQCQALPIALSGRDIIGIAKTGSGKTAAFLWP 574
Score = 58.8 bits (136), Expect = 3e-09
Identities = 23/44 (52%), Positives = 35/44 (79%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++++G+ KTGSGKT A++ PA+VHI +QP ++ DGPI L+ A
Sbjct: 554 GRDIIGIAKTGSGKTAAFLWPALVHIMDQPELQVGDGPIVLICA 597
>SB_18993| Best HMM Match : DEAD (HMM E-Value=9.3e-41)
Length = 690
Score = 60.9 bits (141), Expect = 9e-10
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 322 RSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQ 489
R +EV+ YR + ++TV+G V P+ FEE+ FPDY+Q K G+ EPT IQAQ
Sbjct: 57 RGQHEVDAYRRSKDLTVNGRNVPKPVTTFEESAFPDYIQSYFKREGFTEPTMIQAQ 112
Score = 40.3 bits (90), Expect = 0.001
Identities = 17/26 (65%), Positives = 21/26 (80%)
Frame = +3
Query: 561 YILPAIVHINNQPPIRRSDGPIALVL 638
+ILP IVHIN+QP ++ DGPI LVL
Sbjct: 113 FILPGIVHINHQPLLQPGDGPIVLVL 138
>SB_3952| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 592
Score = 54.4 bits (125), Expect = 8e-08
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHE-VTVSGVEVHNPIQYFEEANFPDYVQ 438
+V QPF K+FY P + K +P E +E+R + E + V G P++ + + +
Sbjct: 58 TVVYQPFRKDFYVEVPELAKMTPEETDEFRLSLENIHVRGKNAPKPVKTWAQTGVQLKIL 117
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLER 516
+K Y++PTPIQAQ P+ M R
Sbjct: 118 DVLKKNSYEKPTPIQAQAIPVIMSGR 143
>SB_14524| Best HMM Match : DEAD (HMM E-Value=3.7e-17)
Length = 500
Score = 52.0 bits (119), Expect = 4e-07
Identities = 26/91 (28%), Positives = 45/91 (49%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
Y HPT+ + +V++ R+ E+ V G V +P+ F +F + + + + GY PT
Sbjct: 161 YKEHPTIAALTAEQVKQLRDKMEIKVKGEHVVSPVLEFFHCSFNESLSKNLSNHGYHSPT 220
Query: 475 PIQAQGWPIAMLERI*LAYSKRVPAKRWPTS 567
PIQ Q P+ + R + + K P+S
Sbjct: 221 PIQMQVLPVLLSGRDVMVCASTGSGKLLPSS 251
>SB_45898| Best HMM Match : DEAD (HMM E-Value=1.3e-36)
Length = 428
Score = 49.6 bits (113), Expect = 2e-06
Identities = 21/57 (36%), Positives = 34/57 (59%)
Frame = +1
Query: 346 YRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+R + ++ G + PI+ ++EA PD + + V +GYK+PTPIQ Q PI + R
Sbjct: 83 FREDFNISTKGGRIPFPIRKWKEAQIPDSILEIVDKLGYKDPTPIQRQAIPIGLQNR 139
Score = 42.7 bits (96), Expect = 2e-04
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 4/47 (8%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSD----GPIALVLA 641
++++GV +TGSGKT A+ +P +V I P I R + GP AL+LA
Sbjct: 139 RDIIGVAETGSGKTAAFAIPLLVWIMGLPKIERDNDADQGPYALILA 185
>SB_46680| Best HMM Match : Helicase_C (HMM E-Value=3.8e-22)
Length = 1058
Score = 47.2 bits (107), Expect = 1e-05
Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Frame = +1
Query: 334 EVEEYRNNHEVTVSGVEVHNPIQYF----EEANFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
++ +R+ + V G +V +P++ F E FPDY+ V+ GY PTPIQ Q P+
Sbjct: 137 KINLFRHEQHIYVKGADVPDPVETFSQLIERYGFPDYIIHNVQERGYTTPTPIQMQATPL 196
>SB_43842| Best HMM Match : RNB (HMM E-Value=0)
Length = 1238
Score = 46.8 bits (106), Expect = 2e-05
Identities = 19/43 (44%), Positives = 30/43 (69%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVL 638
G++++G+ +TGSGKTLAY LP + + + P D P+AL+L
Sbjct: 109 GRDIIGLAETGSGKTLAYSLPLCMLLRTKAPSNPGDTPVALIL 151
Score = 42.3 bits (95), Expect = 3e-04
Identities = 27/101 (26%), Positives = 45/101 (44%)
Frame = +1
Query: 280 FNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMG 459
F ++YD + V + S V+E R + + + G + PI+ F + N P + +
Sbjct: 32 FMWSYYDENEKVSRLSDEVVDEIRWKNGIHIEGEDCPKPIESFHDLNLPPELSTYLAKKN 91
Query: 460 YKEPTPIQAQGWPIAMLERI*LAYSKRVPAKRWPTSCQPLC 582
++ PTPIQ Q M R + ++ K S PLC
Sbjct: 92 FQVPTPIQMQSLSCVMSGRDIIGLAETGSGKTLAYSL-PLC 131
>SB_11691| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1448
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
KD G +A G++L+G KTGSGKTLA+++P +
Sbjct: 588 KDMGFTTMTEIQHKSIAPLLKGRDLLGAAKTGSGKTLAFLVPVV 631
>SB_25090| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1170
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 698 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 749
Score = 30.3 bits (65), Expect = 1.4
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINN 593
G++++ +TGSGKT A++LP + + N
Sbjct: 748 GRDVMACAQTGSGKTAAFLLPVMTSMMN 775
>SB_5994| Best HMM Match : zf-CCHC (HMM E-Value=2.2e-19)
Length = 185
Score = 38.3 bits (85), Expect = 0.005
Identities = 21/52 (40%), Positives = 26/52 (50%)
Frame = +1
Query: 361 EVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
EV VSG I FEEAN + V+ YK+PTP+Q PI + R
Sbjct: 121 EVLVSGNNPVRHINSFEEANLYEAFLNNVRKAQYKKPTPVQKYSIPIVIAGR 172
>SB_19958| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 797
Score = 37.1 bits (82), Expect = 0.012
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALV 635
G +R + L G++L+ +TGSGKT AY+LP + + Q P+AL
Sbjct: 498 GYRRPTPVQKAALPIVMAGRDLMACAQTGSGKTAAYMLPVLTSLIKQGLNAPPRSPLALC 557
Query: 636 LA 641
+A
Sbjct: 558 VA 559
Score = 34.7 bits (76), Expect = 0.065
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +1
Query: 370 VSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
VSG I F E F + + + GY+ PTP+Q PI M R
Sbjct: 469 VSGENQPPKITSFNELPFGEQLMANISRAGYRRPTPVQKAALPIVMAGR 517
>SB_37351| Best HMM Match : DEAD (HMM E-Value=0)
Length = 688
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHI-NNQPPIRRSDGP 623
+D G+ +S Y G++++G +TG+GKTL++ LP + + + + +R P
Sbjct: 89 EDRGITYLFPIQASTFNYIYDGEDVIGQARTGTGKTLSFALPLVEKLQDGKLSQKRGRAP 148
Query: 624 IALVLA 641
LV+A
Sbjct: 149 KVLVMA 154
>SB_52320| Best HMM Match : DEAD (HMM E-Value=0)
Length = 340
Score = 35.5 bits (78), Expect = 0.037
Identities = 19/44 (43%), Positives = 29/44 (65%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++++G KTGSGKTLA+++P I + Q DG ALV++
Sbjct: 87 GRDVLGAAKTGSGKTLAFLIPIIETLWRQ-KWTSMDGLGALVIS 129
>SB_40196| Best HMM Match : DEAD (HMM E-Value=3.5e-07)
Length = 456
Score = 35.1 bits (77), Expect = 0.049
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRR---SDGPIALVL 638
G+++ GV GSGK LAY+LP I I + ++GP+ L+L
Sbjct: 224 GRDVAGVAIEGSGKRLAYLLPIIHQITESSVYQELPLANGPLVLIL 269
>SB_9558| Best HMM Match : DEAD (HMM E-Value=0)
Length = 436
Score = 33.9 bits (74), Expect = 0.11
Identities = 15/54 (27%), Positives = 29/54 (53%)
Frame = +3
Query: 438 TRCKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
++C G+++ + + G++ +G KTGSGKT A+ LP + + + P
Sbjct: 20 SQCVAMGIKKPTEIQLNCVPPILQGRDCIGCAKTGSGKTAAFALPILQKLCDDP 73
>SB_18655| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 33.9 bits (74), Expect = 0.11
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHI 587
++++G +TGSGKTLA+ +P I HI
Sbjct: 169 RDIIGAAETGSGKTLAFGIPIIQHI 193
>SB_38262| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1039
Score = 31.1 bits (67), Expect = 0.80
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILP 572
GK++V + +TGSGKT A+++P
Sbjct: 318 GKDVVAMARTGSGKTAAFLIP 338
>SB_49218| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 480
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +1
Query: 382 EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGW 495
++H P++ + FP Y + Y P P QA W
Sbjct: 6 DIHGPVRKLHKHGFPGYEEDYAAVFKYPTPWPEQAMEW 43
>SB_30826| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1375
Score = 30.7 bits (66), Expect = 1.1
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +1
Query: 397 IQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
I FE+ + + + V GYK+PTP+Q PI +R
Sbjct: 874 ILQFEDVDLGEILLHNVGLAGYKKPTPVQKYAIPIVKGKR 913
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPP 602
++L+ +TGSGKT A+++P + I + P
Sbjct: 913 RDLMACAQTGSGKTAAFLIPILSRIYMEGP 942
>SB_22560| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 308
Score = 30.3 bits (65), Expect = 1.4
Identities = 14/27 (51%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 501 SYVGKNLVGVLKTGSGKTLAY-ILPAI 578
SY G++ +GVL TG GK++ + ILPA+
Sbjct: 192 SYTGRDGIGVLPTGYGKSVIFHILPAM 218
>SB_44408| Best HMM Match : DEAD (HMM E-Value=6.8005e-42)
Length = 238
Score = 30.3 bits (65), Expect = 1.4
Identities = 12/29 (41%), Positives = 21/29 (72%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQP 599
K+++G+ +TGSGKT A+ LP + + + P
Sbjct: 2 KDVIGLAETGSGKTGAFALPILQALLDNP 30
>SB_5719| Best HMM Match : Helicase_C (HMM E-Value=1e-24)
Length = 1366
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVL 638
G + + VL TG+GK+L Y LPA ++ P + P+ ++
Sbjct: 539 GMSSLVVLSTGAGKSLCYQLPAYMYHKRSPCLTLVISPLVSLM 581
>SB_6554| Best HMM Match : Isy1 (HMM E-Value=0)
Length = 675
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNN--HEVTVSGVEVHNPIQYFEEANFPDY 432
+ D VL E EE NN H++ + + +HNP YFE+ + DY
Sbjct: 217 YRDEDDGVLVPIEQEAEEEVNNKLHKILIVNM-IHNPFNYFEKKSPTDY 264
>SB_51015| Best HMM Match : DEAD (HMM E-Value=0.0057)
Length = 96
Score = 29.1 bits (62), Expect = 3.2
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +3
Query: 483 SSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
+S + + +GK++ TG+GKT A++LP + + +P
Sbjct: 38 ASTIPVALMGKDVCACAATGTGKTAAFMLPILERLLYRP 76
Score = 27.5 bits (58), Expect = 9.9
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 439 QGVKTMGYKEPTPIQAQGWPIAML 510
+ V +G+ PTPIQA P+A++
Sbjct: 23 RAVNELGFLHPTPIQASTIPVALM 46
>SB_57459| Best HMM Match : DEAD (HMM E-Value=1.50001e-40)
Length = 490
Score = 29.1 bits (62), Expect = 3.2
Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Frame = +1
Query: 358 HEVTVSGVEVHNPI---QYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLE 513
HEV V + +P+ + FEE +++GV MG+ +P+ IQ P+ + +
Sbjct: 86 HEVEVLRSDPSSPLYSAKSFEELPLSANLRRGVYDMGFNKPSKIQETALPMLLAD 140
>SB_17563| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + G+ G+ +P+PIQ + P+A+ R LA +K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 450 DNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
+ G + + + G++++ K G+GKT AY++P +
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_2247| Best HMM Match : DEAD (HMM E-Value=0)
Length = 439
Score = 28.7 bits (61), Expect = 4.3
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + G+ G+ +P+PIQ + P+A+ R LA +K K
Sbjct: 49 FEDYCLKRELLMGIFEKGFDKPSPIQEESIPVALAGRDILARAKNGTGK 97
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/43 (23%), Positives = 22/43 (51%)
Frame = +3
Query: 450 DNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
+ G + + + G++++ K G+GKT AY++P +
Sbjct: 64 EKGFDKPSPIQEESIPVALAGRDILARAKNGTGKTAAYLVPLL 106
>SB_34731| Best HMM Match : DEAD (HMM E-Value=3.8e-31)
Length = 978
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = +3
Query: 516 NLVGVLKTGSGKTLAYILPAIVH 584
+++ +TGSGKTLAY+ P +VH
Sbjct: 417 HVICAAQTGSGKTLAYLAP-LVH 438
>SB_19782| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 728
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -2
Query: 242 CSDLQRILFSHQILQILQIYCHRC-QIETN 156
CS +L +IL+ +YC +C Q ETN
Sbjct: 14 CSLCSEVLTEPKILRCFHVYCQKCLQAETN 43
>SB_19645| Best HMM Match : Smr (HMM E-Value=8.2)
Length = 346
Score = 27.9 bits (59), Expect = 7.5
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 11/97 (11%)
Frame = +1
Query: 235 SEHASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQ---- 402
SE AS S SLQ N N DP L R+ + R +VT ++ P Q
Sbjct: 239 SEGASLMKLSTSLQSLNTNIKDPRAAFLNRTKIKDLLVRTITKVTFLQQQIAQPRQLTLT 298
Query: 403 -YFEEANFPDYV----QQG--VKTMGYKEPTPIQAQG 492
YF E + DYV Q G + G P+P + G
Sbjct: 299 KYF-ETDSSDYVVELLQDGSAANSKGSDTPSPASSGG 334
>SB_8125| Best HMM Match : MFS_1 (HMM E-Value=3.2e-07)
Length = 401
Score = 27.9 bits (59), Expect = 7.5
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -2
Query: 173 CQIETNYRRICCLLQIWN-HRFHGYYSS 93
C + +YRR CC L +W H + Y+SS
Sbjct: 218 CCVRVDYRRKCC-LHVWRVHTTNTYWSS 244
>SB_58343| Best HMM Match : ELM2 (HMM E-Value=1.4e-16)
Length = 460
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 326 DLLRTVGCGS*KFLLKGWSETESQLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 150
DL T+G + K LL+ + E ++GD D+ R SH+ + + + Y + I N
Sbjct: 41 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 97
Query: 149 RICCLLQIWN 120
R CL+ ++N
Sbjct: 98 RGKCLVTLYN 107
>SB_27871| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 816
Score = 27.9 bits (59), Expect = 7.5
Identities = 21/70 (30%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Frame = -2
Query: 326 DLLRTVGCGS*KFLLKGWSETESQLGD-ACSDLQRILFSHQILQILQIYCHRCQIETNYR 150
DL T+G + K LL+ + E ++GD D+ R SH+ + + + Y + I N
Sbjct: 52 DLSSTLGIQAEKHLLQAEEDAEVEMGDIELEDVSRHQLSHREVFLSRQYEN---INANTI 108
Query: 149 RICCLLQIWN 120
R CL+ ++N
Sbjct: 109 RGKCLVTLYN 118
>SB_22533| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 461
Score = 27.5 bits (58), Expect = 9.9
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Frame = +1
Query: 511 ERI*LAYSKRVPAKRWP---TSCQPLCT 585
E++ + YS+RVPA+ WP T P C+
Sbjct: 430 EKLDVHYSRRVPAQHWPRFFTKFVPYCS 457
>SB_29752| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1281
Score = 27.5 bits (58), Expect = 9.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +3
Query: 531 LKTGSGKTLAYILPAIV 581
+ TGSGK+L Y LPA+V
Sbjct: 41 MPTGSGKSLCYQLPAVV 57
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,571,244
Number of Sequences: 59808
Number of extensions: 368269
Number of successful extensions: 960
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 903
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 959
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1633044375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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