Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV060799.seq
(645 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20) ... 96 2e-20
At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helica... 86 2e-17
At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helica... 86 2e-17
At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative simila... 68 5e-12
At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical ... 68 6e-12
At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar... 63 1e-10
At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative simila... 63 2e-10
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 63 2e-10
At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA... 49 3e-06
At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative 46 3e-05
At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar... 46 3e-05
At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong sim... 43 2e-04
At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative simila... 43 2e-04
At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical ... 39 0.002
At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contai... 39 0.003
At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong ... 39 0.003
At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar... 39 0.003
At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)... 39 0.003
At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative non-co... 39 0.003
At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative simila... 39 0.003
At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)... 39 0.003
At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly id... 38 0.006
At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)... 38 0.006
At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative simila... 38 0.008
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 36 0.017
At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11) ... 36 0.030
At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11) ... 36 0.030
At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)... 36 0.030
At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar... 35 0.040
At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9) s... 35 0.053
At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar... 35 0.053
At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein c... 33 0.12
At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein c... 33 0.16
At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar... 33 0.16
At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar... 33 0.16
At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)... 33 0.16
At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)... 33 0.21
At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar... 33 0.21
At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative simila... 32 0.37
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 30 1.1
At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contai... 30 1.1
At1g51380.1 68414.m05780 eukaryotic translation initiation facto... 30 1.1
At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative simila... 30 1.5
At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative simila... 30 1.5
At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative simila... 30 1.5
At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contai... 30 1.5
At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to... 29 2.0
At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam d... 29 2.6
At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA he... 29 2.6
At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /... 29 2.6
At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1) ide... 29 3.5
At5g43990.2 68418.m05382 SET domain-containing protein identical... 28 4.6
At5g43990.1 68418.m05383 SET domain-containing protein identical... 28 4.6
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa... 28 4.6
At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative simila... 28 4.6
At2g33420.1 68415.m04096 expressed protein 28 4.6
At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative EUKARY... 28 6.1
At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)... 28 6.1
At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)... 28 6.1
At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative 28 6.1
At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative si... 28 6.1
At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes... 28 6.1
At5g46330.1 68418.m05703 leucine-rich repeat transmembrane prote... 27 8.1
At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative 27 8.1
At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)... 27 8.1
At2g25460.1 68415.m03049 expressed protein 27 8.1
>At1g55150.1 68414.m06298 DEAD box RNA helicase, putative (RH20)
similar to ethylene-responsive RNA helicase GI:5669638
from [Lycopersicon esculentum]; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 501
Score = 95.9 bits (228), Expect = 2e-20
Identities = 43/86 (50%), Positives = 54/86 (62%)
Frame = +1
Query: 259 DSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQ 438
D L PF KNFY P V + EVEEYR E+TV G ++ P++ F + FPDYV
Sbjct: 52 DLDGLTPFEKNFYVESPAVAAMTDTEVEEYRKLREITVEGKDIPKPVKSFRDVGFPDYVL 111
Query: 439 QGVKTMGYKEPTPIQAQGWPIAMLER 516
+ VK G+ EPTPIQ+QGWP+AM R
Sbjct: 112 EEVKKAGFTEPTPIQSQGWPMAMKGR 137
Score = 67.7 bits (158), Expect = 6e-12
Identities = 28/44 (63%), Positives = 37/44 (84%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++L+G+ +TGSGKTL+Y+LPAIVH+N QP + DGPI LVLA
Sbjct: 136 GRDLIGIAETGSGKTLSYLLPAIVHVNAQPMLAHGDGPIVLVLA 179
>At5g63120.2 68418.m07924 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 591
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 65.7 bits (153), Expect = 2e-11
Identities = 26/44 (59%), Positives = 38/44 (86%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++L+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LA
Sbjct: 202 GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILA 245
>At5g63120.1 68418.m07925 ethylene-responsive DEAD box RNA helicase,
putative (RH30) strong similarity to ethylene-responsive
RNA helicase [Lycopersicon esculentum] GI:5669638;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 484
Score = 85.8 bits (203), Expect = 2e-17
Identities = 37/89 (41%), Positives = 56/89 (62%)
Frame = +1
Query: 250 PSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
P + +L F KNFY PTV + +V YR +++V G +V P++ F++ANFPD
Sbjct: 115 PKQNFGNLVHFEKNFYVESPTVQAMTEQDVAMYRTERDISVEGRDVPKPMKMFQDANFPD 174
Query: 430 YVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + + +G+ EPTPIQAQGWP+A+ R
Sbjct: 175 NILEAIAKLGFTEPTPIQAQGWPMALKGR 203
Score = 65.7 bits (153), Expect = 2e-11
Identities = 26/44 (59%), Positives = 38/44 (86%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++L+G+ +TGSGKTLAY+LPA+VH++ QP + + DGPI L+LA
Sbjct: 202 GRDLIGIAETGSGKTLAYLLPALVHVSAQPRLGQDDGPIVLILA 245
>At2g47330.1 68415.m05908 DEAD/DEAH box helicase, putative similar
to RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 760
Score = 68.1 bits (159), Expect = 5e-12
Identities = 28/85 (32%), Positives = 46/85 (54%)
Frame = +1
Query: 262 SVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQ 441
S+ +P NK+FY+ ++ + E +YR + VSG +VH P++ FE+ F +
Sbjct: 182 SIDYEPINKDFYEELESISGMTEQETTDYRQRLGIRVSGFDVHRPVKTFEDCGFSSQIMS 241
Query: 442 GVKTMGYKEPTPIQAQGWPIAMLER 516
+K Y++PT IQ Q PI + R
Sbjct: 242 AIKKQAYEKPTAIQCQALPIVLSGR 266
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/74 (37%), Positives = 44/74 (59%)
Frame = +3
Query: 420 FS*LCATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
FS + K ++ A L G++++G+ KTGSGKT A++LP IVHI +QP
Sbjct: 235 FSSQIMSAIKKQAYEKPTAIQCQALPIVLSGRDVIGIAKTGSGKTAAFVLPMIVHIMDQP 294
Query: 600 PIRRSDGPIALVLA 641
++R +GPI ++ A
Sbjct: 295 ELQRDEGPIGVICA 308
>At3g01540.3 68416.m00084 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYSK 537
QAQ WPIAM R +A +K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G+++V + KTGSGKTL Y++P +H+ R GP LVL+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLS 237
>At3g01540.2 68416.m00083 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 619
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYSK 537
QAQ WPIAM R +A +K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G+++V + KTGSGKTL Y++P +H+ R GP LVL+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLS 237
>At3g01540.1 68416.m00082 DEAD box RNA helicase (DRH1) identical to
RNA helicase DRH1 GB:BAA28347 GI:3149952 [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 618
Score = 67.7 bits (158), Expect = 6e-12
Identities = 34/79 (43%), Positives = 44/79 (55%)
Frame = +1
Query: 301 PHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPI 480
P P+ S E Y HE+TVSG +V P+ FE FP + + V + G+ PTPI
Sbjct: 125 PLPSSAPASELSPEAYSRRHEITVSGGQVPPPLMSFEATGFPPELLREVLSAGFSAPTPI 184
Query: 481 QAQGWPIAMLERI*LAYSK 537
QAQ WPIAM R +A +K
Sbjct: 185 QAQSWPIAMQGRDIVAIAK 203
Score = 41.1 bits (92), Expect = 6e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G+++V + KTGSGKTL Y++P +H+ R GP LVL+
Sbjct: 195 GRDIVAIAKTGSGKTLGYLIPGFLHLQRIRNDSRM-GPTILVLS 237
>At3g06480.1 68416.m00750 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 1088
Score = 63.3 bits (147), Expect = 1e-10
Identities = 35/89 (39%), Positives = 48/89 (53%), Gaps = 4/89 (4%)
Frame = +1
Query: 283 NKNFYDPH----PTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVK 450
NK+ PH P V SP E+ YR HEVT +G + P FE + P + + +
Sbjct: 394 NKSLVRPHFVTSPDVPHLSPVEI--YRKQHEVTTTGENIPAPYITFESSGLPPEILRELL 451
Query: 451 TMGYKEPTPIQAQGWPIAMLERI*LAYSK 537
+ G+ PTPIQAQ WPIA+ R +A +K
Sbjct: 452 SAGFPSPTPIQAQTWPIALQSRDIVAIAK 480
Score = 39.1 bits (87), Expect = 0.002
Identities = 18/43 (41%), Positives = 29/43 (67%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
+++V + KTGSGKTL Y++PA + + + R +GP L+LA
Sbjct: 473 RDIVAIAKTGSGKTLGYLIPAFILLRHCRNDSR-NGPTVLILA 514
>At3g09620.1 68416.m01141 DEAD/DEAH box helicase, putative similar
to RNA helicase GB:A57514 GI:897915 from [Rattus
norvegicus]; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 989
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++ +GV KTGSGKTL ++LP + HI +QPP+ DGPI LV+A
Sbjct: 433 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMA 476
Score = 59.3 bits (137), Expect = 2e-09
Identities = 28/84 (33%), Positives = 43/84 (51%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + V YR E+ V G +V PIQ++ + +
Sbjct: 351 IEYEPFRKNFYIEVKDISRMTQDAVNAYRKELELKVHGKDVPRPIQFWHQTGLTSKILDT 410
Query: 445 VKTMGYKEPTPIQAQGWPIAMLER 516
+K + Y++P PIQAQ PI M R
Sbjct: 411 LKKLNYEKPMPIQAQALPIIMSGR 434
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 62.9 bits (146), Expect = 2e-10
Identities = 25/44 (56%), Positives = 34/44 (77%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G++ +GV KTGSGKTL ++LP + HI +QPP+ DGPI LV+A
Sbjct: 566 GRDCIGVAKTGSGKTLGFVLPMLRHIKDQPPVEAGDGPIGLVMA 609
Score = 58.8 bits (136), Expect = 3e-09
Identities = 27/84 (32%), Positives = 43/84 (51%)
Frame = +1
Query: 265 VSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQG 444
+ +PF KNFY + + + EV YR E+ V G +V PI+++ + +
Sbjct: 484 IEYEPFRKNFYIEVKDISRMTQEEVNTYRKELELKVHGKDVPRPIKFWHQTGLTSKILDT 543
Query: 445 VKTMGYKEPTPIQAQGWPIAMLER 516
+K + Y++P PIQ Q PI M R
Sbjct: 544 MKKLNYEKPMPIQTQALPIIMSGR 567
>At4g33370.1 68417.m04744 DEAD-box protein abstrakt, putative RNA
helicase DBP2 - Saccharomyces cerevisiae, PID:g5272
Length = 542
Score = 48.8 bits (111), Expect = 3e-06
Identities = 24/75 (32%), Positives = 40/75 (53%)
Frame = +1
Query: 292 FYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEP 471
++ P V K S +++ R +TV+G ++ PI+ F + FP + + +K G P
Sbjct: 61 WWKPPLHVRKMSTKQMDLIRKQWHITVNGEDIPPPIKNFMDMKFPSPLLRMLKDKGIMHP 120
Query: 472 TPIQAQGWPIAMLER 516
TPIQ QG P+ + R
Sbjct: 121 TPIQVQGLPVVLSGR 135
Score = 46.0 bits (104), Expect = 2e-05
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP---PIRRSD 617
KD G+ L G++++G+ TGSGKTL ++LP I+ + PI +
Sbjct: 113 KDKGIMHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPMIILALQEEIMMPIAAGE 172
Query: 618 GPIALVL 638
GPIALV+
Sbjct: 173 GPIALVI 179
>At5g51280.1 68418.m06357 DEAD-box protein abstrakt, putative
Length = 591
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/74 (31%), Positives = 38/74 (51%)
Frame = +1
Query: 295 YDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPT 474
+ P + K S + + R + V+G ++ PI+ F++ FP V +K G +PT
Sbjct: 111 WKPPLHIRKMSSKQRDLIRKQWHIIVNGDDIPPPIKNFKDMKFPRPVLDTLKEKGIVQPT 170
Query: 475 PIQAQGWPIAMLER 516
PIQ QG P+ + R
Sbjct: 171 PIQVQGLPVILAGR 184
Score = 41.5 bits (93), Expect = 5e-04
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP---PIRRSD 617
K+ G+ + L G++++G+ TGSGKTL ++LP I+ + PI +
Sbjct: 162 KEKGIVQPTPIQVQGLPVILAGRDMIGIAFTGSGKTLVFVLPMIMIALQEEMMMPIAAGE 221
Query: 618 GPIALVL 638
GPI L++
Sbjct: 222 GPIGLIV 228
>At2g33730.1 68415.m04134 DEAD box RNA helicase, putative similar to
SP|P23394 Pre-mRNA splicing factor RNA helicase PRP28
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain
Length = 733
Score = 45.6 bits (103), Expect = 3e-05
Identities = 18/46 (39%), Positives = 34/46 (73%), Gaps = 3/46 (6%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPI---RRSDGPIALVLA 641
++++G+ +TGSGKT A++LP + +I+ PP+ ++GP A+V+A
Sbjct: 351 RDVIGIAETGSGKTAAFVLPMLAYISRLPPMSEENETEGPYAVVMA 396
Score = 41.9 bits (94), Expect = 4e-04
Identities = 20/93 (21%), Positives = 49/93 (52%)
Frame = +1
Query: 238 EHASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 417
E A+ ++DS ++ ++++ D + + + +R + ++ G + P++ +EE+
Sbjct: 262 EEAADTYDSFDMR-VDRHWSDKRLEEMTERDWRI--FREDFNISYKGSRIPRPMRSWEES 318
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
+ + V+ GYK+P+PIQ P+ + +R
Sbjct: 319 KLTSELLKAVERAGYKKPSPIQMAAIPLGLQQR 351
>At5g08610.1 68418.m01024 DEAD box RNA helicase (RH26) strong
similarity to RNA helicase RH26 [Arabidopsis thaliana]
GI:3776025; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH26
GI:3776024
Length = 850
Score = 43.2 bits (97), Expect = 2e-04
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRR-SDGP 623
KD G + + L GK+++ KTG+GKT+A++LPAI + PP R S P
Sbjct: 398 KDAGFETMTVVQEATLPIILQGKDVLAKAKTGTGKTVAFLLPAIEAVIKSPPASRDSRQP 457
Query: 624 IALVLAL 644
+VL +
Sbjct: 458 PIIVLVV 464
>At1g31970.1 68414.m03931 DEAD/DEAH box helicase, putative similar
to p68 RNA helicase [Schizosaccharomyces pombe]
GI:173419
Length = 537
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/26 (61%), Positives = 24/26 (92%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHI 587
G++L+G+ KTGSGKTLA+ +PAI+H+
Sbjct: 151 GRDLIGIAKTGSGKTLAFGIPAIMHV 176
Score = 33.5 bits (73), Expect = 0.12
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Frame = +1
Query: 334 EVEEYRNNHEVTVSGVEV--HNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
E E + VT GVE + ++ F E+N P+ V KT +++P+PIQ+ WP +
Sbjct: 92 EGESEQQKVVVTGKGVEEAKYAALKTFAESNLPENVLDCCKT--FEKPSPIQSHTWPFLL 149
>At5g08620.1 68418.m01025 DEAD box RNA helicase (RH25) identical to
RNA helicase [Arabidopsis thaliana] GI:3776023; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 563
Score = 39.1 bits (87), Expect = 0.002
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSD-GP 623
+D G + + L GK+++ KTG+GKT+A++LP+I + PP R + P
Sbjct: 96 EDAGFKTMTVVQEATLPLILQGKDILAKAKTGTGKTVAFLLPSIEAVIKAPPASRDNRHP 155
Query: 624 IALVLAL 644
+VL +
Sbjct: 156 PIIVLVV 162
>At5g65900.1 68418.m08295 DEAD/DEAH box helicase, putative contains
Pfam profiles PF00270:DEAD/DEAH box helicase and
PF00271: Helicase conserved C-terminal domain;
identical to cDNA RH27 helicase, partial GI:4033334
Length = 633
Score = 38.7 bits (86), Expect = 0.003
Identities = 15/44 (34%), Positives = 28/44 (63%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
K+ G R + + +G++++G +TGSGKTLA+++PA+
Sbjct: 170 KEMGFARMTQIQAKAIPPLMMGEDVLGAARTGSGKTLAFLIPAV 213
Score = 28.7 bits (61), Expect = 3.5
Identities = 19/79 (24%), Positives = 32/79 (40%)
Frame = +1
Query: 274 QPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANFPDYVQQGVKT 453
+P K T K EVE+ ++ + + + FE + D + +K
Sbjct: 115 EPKKKKKKQRKDTEAKSEEEEVEDKEEEKKLEETSIMTNKT---FESLSLSDNTYKSIKE 171
Query: 454 MGYKEPTPIQAQGWPIAML 510
MG+ T IQA+ P M+
Sbjct: 172 MGFARMTQIQAKAIPPLMM 190
>At5g63630.1 68418.m07989 DEAD box RNA helicase, putative strong
similarity to RNA helicase RH25 [Arabidopsis thaliana]
GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain; identical to cDNA DEAD box RNA helicase, RH31
GI:3776030
Length = 522
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/52 (34%), Positives = 29/52 (55%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQPP 602
KD G + + L GK+++ KTG+GKT+A++LP+I + PP
Sbjct: 70 KDAGYETMTVVQEATLPIILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPP 121
>At5g14610.1 68418.m01713 DEAD box RNA helicase, putative similar to
RNA helicase DRH1 [Arabidopsis thaliana] GI:3149952;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain, PF00397:
WW domain
Length = 713
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
+++V + KTGSGKTL Y++P +H+ R GP LVL+
Sbjct: 267 RDIVAIAKTGSGKTLGYLIPGFMHLQRIHNDSRM-GPTILVLS 308
Score = 36.3 bits (80), Expect = 0.017
Identities = 16/31 (51%), Positives = 21/31 (67%)
Frame = +1
Query: 445 VKTMGYKEPTPIQAQGWPIAMLERI*LAYSK 537
V + G+ P+PIQAQ WPIAM R +A +K
Sbjct: 244 VYSAGFSAPSPIQAQSWPIAMQNRDIVAIAK 274
Score = 31.1 bits (67), Expect = 0.65
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +1
Query: 340 EEYRNNHEVTVSGVEVHNPIQYFEEANFPD 429
E Y HE+TVSG +V P+ FE P+
Sbjct: 141 EAYCRKHEITVSGGQVPPPLMSFEATGLPN 170
>At4g16630.1 68417.m02514 DEAD/DEAH box helicase, putative (RH28)
identical to cDNA DEAD box RNA helicase, RH28 GI:3776026
Length = 789
Score = 38.7 bits (86), Expect = 0.003
Identities = 21/50 (42%), Positives = 28/50 (56%)
Frame = +1
Query: 367 TVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
TV GV H F E N + + +T+GYK+PTPIQA P+A+ R
Sbjct: 158 TVDGVSFH--ADTFMELNLSRPLLRACETLGYKKPTPIQAACIPLALTGR 205
Score = 29.5 bits (63), Expect = 2.0
Identities = 14/52 (26%), Positives = 27/52 (51%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
C+ G ++ ++ + + G++L TGSGKT A+ LP + + +P
Sbjct: 182 CETLGYKKPTPIQAACIPLALTGRDLCASAITGSGKTAAFALPTLERLLFRP 233
>At3g18600.1 68416.m02364 DEAD/DEAH box helicase, putative
non-consensus acceptor splice site AT at exon 2; similar
to DEAD box helicase protein GB:NP_006764 from [Homo
sapiens], contains Pfam profile: PF00270 DEAD/DEAH box
helicase
Length = 568
Score = 38.7 bits (86), Expect = 0.003
Identities = 16/44 (36%), Positives = 27/44 (61%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
K+ G Q + + GK+++G +TGSGKTLA+++PA+
Sbjct: 105 KEMGFQYMTQIQAGSIQPLLEGKDVLGAARTGSGKTLAFLIPAV 148
>At3g09720.1 68416.m01151 DEAD/DEAH box helicase, putative similar
to RNA helicase involved in rRNA processing GB:6321267
from [Saccharomyces cerevisiae]c, ontains DEAD and DEAH
box domain
Length = 541
Score = 38.7 bits (86), Expect = 0.003
Identities = 20/60 (33%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Frame = +1
Query: 349 RNNHEVTVSGVEVHNPIQYFEEANF----PDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
R + + VSG + P++ F E + Y+ + + +G+KEPTPIQ Q PI + R
Sbjct: 120 RKQYSIHVSGNNIPPPLKSFAELSSRYGCEGYILRNLAELGFKEPTPIQRQAIPILLSGR 179
>At2g40700.1 68415.m05021 DEAD/DEAH box helicase, putative (RH17)
identical to GB:CAA09207, contains a DEAD/DEAH box
family ATP-dependent helicas signature; identical to
cDNA DEAD box RNA helicase, RH17 GI:3776008
Length = 609
Score = 38.7 bits (86), Expect = 0.003
Identities = 18/44 (40%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHI-NNQPPIRRSDGPIALVL 638
G++++ TG+GKT+AY+ P I H+ + P + RS G ALV+
Sbjct: 67 GRDVLVNAPTGTGKTIAYLAPLIHHLQGHSPKVDRSHGTFALVI 110
>At5g62190.1 68418.m07807 DEAD box RNA helicase (PRH75) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:1488521; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain
Length = 671
Score = 37.9 bits (84), Expect = 0.006
Identities = 19/53 (35%), Positives = 29/53 (54%)
Frame = +3
Query: 441 RCKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
+ K NG++ +S G +LVG +TG GKTLA++LP + + N P
Sbjct: 110 KLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGP 162
>At4g34910.1 68417.m04950 DEAD/DEAH box helicase, putative (RH16)
identical to cDNA DEAD box RNA helicase, RH16 GI:3776006
Length = 626
Score = 37.9 bits (84), Expect = 0.006
Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQPPI-RRSDGPIAL 632
G+++ S + GK++V KTGSGKTLAY+LP + + + + ++ P A
Sbjct: 65 GIEKPTLIQQSAIPYILEGKDVVARAKTGSGKTLAYLLPLLQKLFSADSVSKKKLAPSAF 124
Query: 633 VL 638
+L
Sbjct: 125 IL 126
>At1g16280.1 68414.m01949 DEAD/DEAH box helicase, putative similar
to gb|L13612 DEAD-box protein (dbp45A) from Drosophila
melanogaster and is a member of PF|00270 DEAD/DEAH box
helicase family
Length = 491
Score = 37.5 bits (83), Expect = 0.008
Identities = 15/52 (28%), Positives = 30/52 (57%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
CK+ G+++ + + G++++G+ +TGSGKT A+ LP + + P
Sbjct: 73 CKELGMRKPTPVQTHCVPKILAGRDVLGLAQTGSGKTAAFALPILHRLAEDP 124
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 36.3 bits (80), Expect = 0.017
Identities = 14/43 (32%), Positives = 30/43 (69%)
Frame = +3
Query: 468 TDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQ 596
TD S++ + + G++++G +TGSGKTLA+++P + ++ +
Sbjct: 95 TDVQSAA-IPHALCGRDILGAARTGSGKTLAFVIPILEKLHRE 136
>At3g58510.2 68416.m06522 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIAL 632
++L+ +TGSGKT A+ P I I + R G A+
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAV 228
>At3g58510.1 68416.m06521 DEAD box RNA helicase, putative (RH11)
similar to RNA helicase DBY protein [Mus musculus]
GI:3790186, SP|O00571 DEAD-box protein 3 (Helicase-like
protein 2) {Homo sapiens}; contains Pfam profiles
PF00270: DEAD/DEAH box helicase, PF00271: Helicase
conserved C-terminal domain; identical to cDNA DEAD box
RNA helicase, RH11 GI:3775998
Length = 612
Score = 35.5 bits (78), Expect = 0.030
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 364 VTVSGVEVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLER 516
V SG +V P+ F + + D + ++ Y PTP+Q PI + ER
Sbjct: 139 VETSGGDVPPPVNTFADIDLGDALNLNIRRCKYVRPTPVQRHAIPILLAER 189
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/40 (35%), Positives = 21/40 (52%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIAL 632
++L+ +TGSGKT A+ P I I + R G A+
Sbjct: 189 RDLMACAQTGSGKTAAFCFPIISGIMKDQHVERPRGSRAV 228
>At3g16840.1 68416.m02150 DEAD/DEAH box helicase, putative (RH13)
similar to RNA helicase GB:CAA09204 from [Arabidopsis
thaliana]; identical to cDNA DEAD box RNA helicase, RH13
GI:3776002
Length = 832
Score = 35.5 bits (78), Expect = 0.030
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 501 SYVGKNLVGVLKTGSGKTLAYILPAI 578
+Y GK+++G +TGSGKTLA+ LP +
Sbjct: 225 AYQGKDVIGAAETGSGKTLAFGLPIL 250
>At3g22330.1 68416.m02820 DEAD box RNA helicase, putative similar to
RNA helicases GI:3775995, GI:3775987 from [Arabidopsis
thaliana]; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 616
Score = 35.1 bits (77), Expect = 0.040
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +3
Query: 456 GLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVH-INNQPPIRRSDGPIAL 632
G+++ + L + G++++G +TG+GKTLA+ +P I I R P+ L
Sbjct: 123 GIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCL 182
Query: 633 VLA 641
VLA
Sbjct: 183 VLA 185
>At3g22310.1 68416.m02818 DEAD box RNA helicase, putative (RH9)
similar to RNA helicases GI:3775995, GI:3775987
[Arabidopsis thaliana]; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 610
Score = 34.7 bits (76), Expect = 0.053
Identities = 21/66 (31%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVH-INNQPPIRRSDGP 623
K G+++ + L + G++++G +TG+GKTLA+ +P I I R P
Sbjct: 132 KGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKIIKFNAKHGRGKNP 191
Query: 624 IALVLA 641
LVLA
Sbjct: 192 QCLVLA 197
>At2g42520.1 68415.m05262 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 633
Score = 34.7 bits (76), Expect = 0.053
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
Frame = +1
Query: 247 SPSWD--SVSLQPFNKNFYDPHPTVLKRSPYEVE-EYRNNHEVTVSGVEVHNPIQYFEEA 417
S WD + PF + +P P ++ + + + + SG V P+ F E
Sbjct: 105 SGGWDRREREVNPFENDDSEPEPAFTEQDNTVINFDAYEDIPIETSGDNVPPPVNTFAEI 164
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
+ + + ++ Y +PTP+Q PI +
Sbjct: 165 DLGEALNLNIRRCKYVKPTPVQRHAIPILL 194
Score = 31.9 bits (69), Expect = 0.37
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLA 641
G++L+ +TGSGKT A+ P I I ++R G P+A++L+
Sbjct: 196 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHVQRPRGSRTVYPLAVILS 244
>At3g02065.2 68416.m00170 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 505
Score = 33.5 bits (73), Expect = 0.12
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Frame = +1
Query: 325 SPYEVEEYRNNHEVTVSGV--EVHNPIQYFEEANFPDYVQQGVKTMGYKEPTPIQAQGWP 498
S ++ + R ++ V G V P+ F P + ++T GY PTPIQ Q P
Sbjct: 83 SSHDAQLLRRKLDIHVQGQGSAVPPPVLTFTSCGLPPKLLLNLETAGYDFPTPIQMQAIP 142
Query: 499 IAMLERI*LA 528
A+ + LA
Sbjct: 143 AALTGKSLLA 152
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAI---VHINNQPPIRRSDGPIALVLA 641
GK+L+ TGSGKT ++++P I +++ P + P+A+VLA
Sbjct: 147 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLA 193
>At3g02065.1 68416.m00171 DEAD/DEAH box helicase family protein
contains Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 368
Score = 33.1 bits (72), Expect = 0.16
Identities = 17/47 (36%), Positives = 29/47 (61%), Gaps = 3/47 (6%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAI---VHINNQPPIRRSDGPIALVLA 641
GK+L+ TGSGKT ++++P I +++ P + P+A+VLA
Sbjct: 10 GKSLLASADTGSGKTASFLVPIISRCTTYHSEHPSDQRRNPLAMVLA 56
>At2g07750.1 68415.m01003 DEAD box RNA helicase, putative similar to
RNA helicase RH25 [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 845
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 453 NGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
+G+ + + L++ GK+ + KTG+GK++A++LPAI
Sbjct: 393 SGIVKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 434
>At1g63250.1 68414.m07150 DEAD box RNA helicase, putative similar to
RNA helicase (RH25) [Arabidopsis thaliana] GI:3776023;
contains Pfam profiles PF00270: DEAD/DEAH box helicase,
PF00271: Helicase conserved C-terminal domain
Length = 798
Score = 33.1 bits (72), Expect = 0.16
Identities = 14/42 (33%), Positives = 27/42 (64%)
Frame = +3
Query: 453 NGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
+G+ + + L++ GK+ + KTG+GK++A++LPAI
Sbjct: 346 SGILKMTRVQDATLSECLDGKDALVKAKTGTGKSMAFLLPAI 387
>At1g59990.1 68414.m06758 DEAD/DEAH box helicase, putative (RH22)
similar to RNA helicase GI:3776015 from [Arabidopsis
thaliana]; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00270: DEAD/DEAH box
helicase; matches EST OAO811-2
Length = 581
Score = 33.1 bits (72), Expect = 0.16
Identities = 15/49 (30%), Positives = 25/49 (51%)
Frame = +3
Query: 447 KDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINN 593
+D+G R + + GK+++ +TGSGKT Y+ P I + N
Sbjct: 96 RDSGFDRPSLTQAVCIPSILSGKDVIVAAETGSGKTHGYLAPIIDQLTN 144
>At5g60990.1 68418.m07651 DEAD/DEAH box helicase, putative (RH10)
probable replication protein A1, Oryza sativa,
EMBL:AF009179
Length = 456
Score = 32.7 bits (71), Expect = 0.21
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +3
Query: 444 CKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAI 578
C+ G + + L + GK+++G+ +TGSGKT A+ +P +
Sbjct: 24 CERLGWKNPSKIQAEALPFALEGKDVIGLAQTGSGKTGAFAIPIL 68
>At3g58570.1 68416.m06528 DEAD box RNA helicase, putative similar to
SP|O00571 DEAD-box protein 3 (Helicase-like protein 2)
{Homo sapiens}, DEAD box RNA helicase DDX3 [Homo
sapiens] GI:3523150; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 646
Score = 32.7 bits (71), Expect = 0.21
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
Frame = +1
Query: 247 SPSWD--SVSLQPF-NKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEA 417
S WD PF N DP + + E Y + + SG V P+ F E
Sbjct: 93 SGGWDRRDTETNPFGNDGNADPAVNEQENTVINFEAYEDI-PIETSGDNVPPPVNTFAEI 151
Query: 418 NFPDYVQQGVKTMGYKEPTPIQAQGWPI 501
+ + + ++ Y +PTP+Q PI
Sbjct: 152 DLGEALNLNIQRCKYVKPTPVQRNAIPI 179
Score = 31.9 bits (69), Expect = 0.37
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDG-----PIALVLA 641
G++L+ +TGSGKT A+ P I I I R G P+A++L+
Sbjct: 183 GRDLMACAQTGSGKTAAFCFPIISGIMKDQHIERPRGVRGVYPLAVILS 231
>At1g77050.1 68414.m08971 DEAD/DEAH box helicase, putative similar
to RNA helicase GI:3776027 from [Arabidopsis thaliana]
Length = 513
Score = 31.9 bits (69), Expect = 0.37
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAM 507
FE N V +K GYK PTPIQ + P+ +
Sbjct: 30 FESLNLGPNVFNAIKKKGYKVPTPIQRKTMPLIL 63
Score = 30.7 bits (66), Expect = 0.87
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQPPIRRSDGPIALVLA 641
G ++V + +TGSGKT A+++P + + P G AL+L+
Sbjct: 65 GVDVVAMARTGSGKTAAFLIPMLEKLKQHVP---QGGVRALILS 105
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +3
Query: 492 LADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQ 596
L + G++++ KTG+GKTLA+ +P I + +
Sbjct: 133 LVPALQGRDIIARAKTGTGKTLAFGIPIIKRLTEE 167
>At3g06980.1 68416.m00829 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 781
Score = 30.3 bits (65), Expect = 1.1
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIVHINNQ 596
GK+ + ++GSGKTLAY++P I + +
Sbjct: 411 GKSCIIADQSGSGKTLAYLVPVIQRLREE 439
>At1g51380.1 68414.m05780 eukaryotic translation initiation factor
4A, putative / eIF-4A, putative
Length = 392
Score = 30.3 bits (65), Expect = 1.1
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = +1
Query: 394 PIQYFEEANFPDYVQQGVKTMGYKEPTPIQ 483
PI+ F++ D V +GV GYK+P+ IQ
Sbjct: 20 PIKSFDDMGMNDKVLRGVYDYGYKKPSEIQ 49
>At4g00660.2 68417.m00091 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + G+ G++ P+PIQ + PIA+ R LA +K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At4g00660.1 68417.m00090 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicases
Length = 505
Score = 29.9 bits (64), Expect = 1.5
Identities = 16/49 (32%), Positives = 25/49 (51%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + G+ G++ P+PIQ + PIA+ R LA +K K
Sbjct: 133 FEDYFLKRELLMGIYEKGFERPSPIQEESIPIALTGRDILARAKNGTGK 181
>At1g71370.1 68414.m08239 DEAD/DEAH box helicase, putative similar
to ATP-dependent RNA helicase GB:6321111 from (S.
cerevisiae)
Length = 558
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHI---NNQPP 602
K++V TGSGKTLA++LP I I N+ PP
Sbjct: 54 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 86
>At1g71280.1 68414.m08226 DEAD/DEAH box helicase, putative contains
Pfam profile: PF00270 DEAD/DEAH box helicase
Length = 465
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/33 (51%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAIVHI---NNQPP 602
K++V TGSGKTLA++LP I I N+ PP
Sbjct: 55 KDVVVDAATGSGKTLAFLLPFIEIIRRSNSYPP 87
>At1g58470.1 68414.m06651 RNA-binding protein (XF41) identical to
RNA binding protein GI:18181938 from (Arabidopsis
thaliana); contains InterPro entry IPR000504:
RNA-binding region RNP-1 (RNA recognition motif) (RRM)
domain 15450911 gb AY054536.1
Length = 360
Score = 29.5 bits (63), Expect = 2.0
Identities = 13/54 (24%), Positives = 27/54 (50%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQY 405
A+ SW++ +QP PHPT + +Y N +++ + + +NP+ +
Sbjct: 263 ANVSWNNPIMQPTGFYCAPPHPTPPPTNNLGYIQYMNGFDLSGTNISGYNPLAW 316
>At5g64420.1 68418.m08092 DNA polymerase V family contains Pfam domain
PF04931: DNA polymerase V
Length = 1306
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Frame = -2
Query: 290 FLLKGWSETESQLGDACSDLQRILFSHQILQILQIYCH 177
+L + + E +Q G + Q +LF ++L +L+IY H
Sbjct: 982 YLAQIFKEKRNQAGGETAQSQLVLFKLRVLSLLEIYLH 1019
>At4g09730.1 68417.m01598 DEAD/DEAH box helicase, putative RNA
helicase -Mus musculus,PIR2:I84741
Length = 621
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/22 (59%), Positives = 17/22 (77%)
Frame = +3
Query: 513 KNLVGVLKTGSGKTLAYILPAI 578
K++V TGSGKTLAY+LP +
Sbjct: 150 KSVVLGSHTGSGKTLAYLLPIV 171
>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
pentatricopeptide (PPR) repeat-containing protein
contains Pfam profiles: PF00271 helicase conserved
C-terminal domain, PF01535 PPR repeat, PF00270:
DEAD/DEAH box helicase
Length = 1145
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVHI 587
TGSGKTLAY+LP + I
Sbjct: 156 TGSGKTLAYLLPILSEI 172
>At3g49500.1 68416.m05410 RNA-dependent RNA polymerase (SDE1)
identical to RNA-dependent RNA polymerase [Arabidopsis
thaliana] gi|8248473|gb|AAF74208
Length = 1196
Score = 28.7 bits (61), Expect = 3.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +3
Query: 189 LEDLEDLVGKKNSLEVRTCVAQLGFCFTPTF 281
+ D++ +GK V C A++G CF+ T+
Sbjct: 530 VSDIKTWMGKFKDKNVAKCAARMGLCFSSTY 560
>At5g43990.2 68418.m05382 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 740
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 423
ASPS S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 146 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 202
Query: 424 PDYVQQGVKTM 456
PD V +G +M
Sbjct: 203 PDSVDRGDSSM 213
>At5g43990.1 68418.m05383 SET domain-containing protein identical to
SET domain protein SUVR2 [Arabidopsis thaliana]
GI:15290521; contains Pfam profiles PF00856: SET domain,
PF05033: Pre-SET motif; identical to cDNA SET domain
protein SUVR2 GI:15290520
Length = 717
Score = 28.3 bits (60), Expect = 4.6
Identities = 21/71 (29%), Positives = 35/71 (49%)
Frame = +1
Query: 244 ASPSWDSVSLQPFNKNFYDPHPTVLKRSPYEVEEYRNNHEVTVSGVEVHNPIQYFEEANF 423
ASPS S +L+ + N + P +L P +E + E+ ++ VE PI ++
Sbjct: 123 ASPSLGSPTLEGPSINDEENAPILLPYHPVPIENDHDAGELILTKVE---PITNMPLSSI 179
Query: 424 PDYVQQGVKTM 456
PD V +G +M
Sbjct: 180 PDSVDRGDSSM 190
>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
putative ATP-dependent helicases
Length = 1058
Score = 28.3 bits (60), Expect = 4.6
Identities = 15/52 (28%), Positives = 25/52 (48%)
Frame = +3
Query: 417 KFS*LCATRCKDNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILP 572
K S + K GL ++ + ++ + GKN+ T SGK+L Y +P
Sbjct: 377 KLSETTKSALKRIGLNTLYSHQAEAISAALAGKNVAVATMTSSGKSLCYNVP 428
>At4g15850.1 68417.m02410 DEAD/DEAH box helicase, putative similar
to D-E-A-D box protein [Drosophila melanogaster]
GI:499204; contains Pfam profiles PF00270: DEAD/DEAH box
helicase, PF00271: Helicase conserved C-terminal domain
Length = 512
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +3
Query: 537 TGSGKTLAYILPAIVHINNQPPIR 608
TGSGKTL+Y LP IV + P+R
Sbjct: 71 TGSGKTLSYALP-IVQLLASRPVR 93
>At2g33420.1 68415.m04096 expressed protein
Length = 1039
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +1
Query: 28 SKRIHSLNKHLQLNPKI 78
S IHSLNK L LNP+I
Sbjct: 789 SSHIHSLNKTLSLNPRI 805
>At5g19210.2 68418.m02287 DEAD/DEAH box helicase, putative
EUKARYOTIC INITIATION FACTOR 4A-II (EIF-4A-II), Homo
sapiens, SWISSPROT:IF42_HUMAN
Length = 472
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 504 YVGKNLVGVLKTGSGKTLAYILPAIVHINNQ 596
+ G++ + +TGSGKTL Y+L IN Q
Sbjct: 111 FTGRDCILHAQTGSGKTLTYLLLIFSLINPQ 141
>At3g61240.2 68416.m06854 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA +K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At3g61240.1 68416.m06853 DEAD/DEAH box helicase, putative (RH12)
identical to cDNA DEAD box RNA helicase, RH12 GI:3776000
Length = 498
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA +K K
Sbjct: 126 FEDYFLKRDLLKGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 174
>At2g45810.1 68415.m05697 DEAD/DEAH box helicase, putative
Length = 528
Score = 27.9 bits (59), Expect = 6.1
Identities = 15/49 (30%), Positives = 26/49 (53%)
Frame = +1
Query: 406 FEEANFPDYVQQGVKTMGYKEPTPIQAQGWPIAMLERI*LAYSKRVPAK 552
FE+ + +G+ G+++P+PIQ + PIA+ LA +K K
Sbjct: 156 FEDYFLKRDLLRGIYEKGFEKPSPIQEESIPIALTGSDILARAKNGTGK 204
>At1g27880.1 68414.m03416 ATP-dependent DNA helicase, putative
similar to SP|O94761 ATP-dependent DNA helicase Q4
(RecQ4) {Homo sapiens}; contains Pfam profiles PF00270:
DEAD/DEAH box helicase, PF00271: Helicase conserved
C-terminal domain
Length = 911
Score = 27.9 bits (59), Expect = 6.1
Identities = 11/24 (45%), Positives = 18/24 (75%)
Frame = +3
Query: 510 GKNLVGVLKTGSGKTLAYILPAIV 581
G + + VL TG+GK+L Y +PA++
Sbjct: 284 GSSTMLVLPTGAGKSLCYQIPAMI 307
>At1g04470.1 68414.m00438 expressed protein EST gb|ATTS5672 comes
from this gene
Length = 1035
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = +1
Query: 28 SKRIHSLNKHLQLNPKI 78
S ++HSLNK L LNP++
Sbjct: 786 SSQLHSLNKSLSLNPRV 802
>At5g46330.1 68418.m05703 leucine-rich repeat transmembrane protein
kinase, putative
Length = 1173
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
Frame = +3
Query: 477 YSSSRLADSYVGKNLVGVLKTG--SGKTLAYILPAIVHINNQPPIRRSDGPIALVL 638
Y+ ++ +NLV +L SGKT A +LP + + N + I S PI +L
Sbjct: 914 YTEAKTLSQLKHRNLVKILGFAWESGKTKALVLPFMENGNLEDTIHGSAAPIGSLL 969
>At5g11200.1 68418.m01309 DEAD/DEAH box helicase, putative
Length = 427
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 450 DNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
D+G + + + +G +++ K+G GKT ++L + I P
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
>At5g11170.1 68418.m01305 DEAD/DEAH box helicase, putative (RH15)
DEAD BOX RNA helicase RH15, Arabidopsis thaliana,
EMBL:ATH010466
Length = 427
Score = 27.5 bits (58), Expect = 8.1
Identities = 11/50 (22%), Positives = 23/50 (46%)
Frame = +3
Query: 450 DNGLQRTDAYSSSRLADSYVGKNLVGVLKTGSGKTLAYILPAIVHINNQP 599
D+G + + + +G +++ K+G GKT ++L + I P
Sbjct: 63 DSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSP 112
>At2g25460.1 68415.m03049 expressed protein
Length = 423
Score = 27.5 bits (58), Expect = 8.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 164 ETNYRRICCLLQIWNHRFHGYY 99
E + R+CC++ WN F+ +Y
Sbjct: 80 EEEFERVCCIVGPWNLSFNVFY 101
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,042,497
Number of Sequences: 28952
Number of extensions: 259755
Number of successful extensions: 808
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1334473344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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